Hi Allison
The parameter you give the -i flag is the file name for a single slice in the
correct dicom series (the t1-weighted scan).
Cheers
Bruce
On Jan 11, 2025, at 3:51 PM, allio34...@aol.com wrote:
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Hi,
I'm following the tutorial for dcmunpack, but am getting stuck here:
Any ideas on what I'm doing wrong?
<1736628593324blob.jpg>
Thanks,
Allison O.
On Thursday, January 9, 2025 at 08:32:09 AM EST, Douglas N. Greve
<dgr...@mgh.harvard.edu> wrote:
welcome to freesurfer!
To convert from dicom to mgz, you can do a couple of things:
use mri_convert, eg,
mri_convert /path/to/dicomfile mprage.mgz
Then run recon-all like
recon-all -i mprage.mgz -s subjectname -all
You can also use dcmunpack to unpack all volumes from a dicom directory
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On 1/8/2025 4:18 PM, allio34...@aol.com<mailto:allio34...@aol.com> wrote:
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Hi, I was wondering if anyone can point me to a good tutorial that would focus
on how to upload and process DICOM data into FS / FreeView.
I have a recent Triage Brain Atrophy report from NeuroQuant and would like to
see how this compares to results generated in FS.
I am a brand-new user and just installed FS on my computer.
Thank you,
Allison O.
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