welcome to freesurfer!
To convert from dicom to mgz, you can do a couple of things:
use mri_convert, eg,
mri_convert /path/to/dicomfile mprage.mgz
Then run recon-all like
recon-all -i mprage.mgz -s subjectname -all
You can also use dcmunpack to unpack all volumes from a dicom directory
See https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Practice for
more info
Also check out our tutorials
On 1/8/2025 4:18 PM, allio34...@aol.com wrote:
External Email - Use Caution
Hi, I was wondering if anyone can point me to a good tutorial that
would focus on how to upload and process DICOM data into FS / FreeView.
I have a recent Triage Brain Atrophy report from NeuroQuant and would
like to see how this compares to results generated in FS.
I am a brand-new user and just installed FS on my computer.
Thank you,
Allison O.
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