External Email - Use Caution Thank you Dear Douglas
Ramesh On Mon, Jan 6, 2025 at 7:46 PM Douglas N. Greve <dgr...@mgh.harvard.edu> wrote: > You have to pass it the name of the subject with the --s flag. The subject > name is that produced by recon-all -s subject ... > > > On 1/4/2025 7:30 AM, Ramesh Babu wrote: > > External Email - Use Caution > Hello, > > I want to register JHU-ICBM-tracts-maxprob-thr0-1mm.nii.gz with local > subject space. For this, I want to generate a registration.dat file which > will be used for registration with local subject image. But I am facing an > issue which I pasted below. > > echo $SUBJECTS_DIR > /usr/local/freesurfer/subjects > > bbregister --ss sample-001.mgz --mov > /usr/local/fsl/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-1mm.nii.gz > --reg registration_matrix.dat --init-fsl --dti > ERROR: Flag --ss unrecognized. > --ss sample-001.mgz --mov > /usr/local/fsl/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-1mm.nii.gz > --reg registration_matrix.dat --init-fsl --dti > > I tried with -s flag, but still the same error. Could you please provide > me a solution? > > Regards > Ramesh > > > > > > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1h3J95fBMLp4Ur5bBSEgZ2oPH7TuAjBROJH6JSCoQblCY-g2VRihU8MGaTdpCkKko1LGWdVGOekkAWQRJjjDhOOr_YYYvs-_3aRvtwfTeBpKB0D6pTtz_W8YxM5B6bQSJ96hP4Ist85gUVz1VgfgOMJ_Cg5ZLPUUzYpN-krv7iAsW4aqklUXiFclOhxhZhAhsgyeTb7U4QH8BLUcQld3uYn6gRXXDywhmpe0JtonrbFl4DexMSiF16VUjLzVguHrtdw34smwuJQHi4WfHI0JSsgFzgxDhQV_D2vxsGGp16bYNJLKbJVJ3ONDFTFfikEAA0XmhTCqSFdOL7QefqGJB9w/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > https://secure-web.cisco.com/1642FES_O08im1g1h0GI6dAbDSO_wqx4elKFDMOaFzEbXb7gZKDtowol8RHjPsvsR6OjFOo9Elgw4a4EjmMa4ALSaI7bf6tfKAubwCO_Zrl2Rmrb1e6yoaPsWj_1yo1qv4Ey4Ke0oBuAs_b7zU9fTFrbsZUpwjo16GGXXhBr_ObNRnxq_1WpighsZENxzHlbySKT-oeaLyLc39lOkVqtIfZGbjvocF9puOiFy8EIXezuFiHSL4vWrEENsU6z-Dx9XvVUwPAq3WOP3WdKDwbfabFNO1oixfWB4m46vmZhc0QFBTcDRyQzdlxe1CWxrYU1VUlZDTx96J8As8edAI2do3w/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > < > https://secure-web.cisco.com/1642FES_O08im1g1h0GI6dAbDSO_wqx4elKFDMOaFzEbXb7gZKDtowol8RHjPsvsR6OjFOo9Elgw4a4EjmMa4ALSaI7bf6tfKAubwCO_Zrl2Rmrb1e6yoaPsWj_1yo1qv4Ey4Ke0oBuAs_b7zU9fTFrbsZUpwjo16GGXXhBr_ObNRnxq_1WpighsZENxzHlbySKT-oeaLyLc39lOkVqtIfZGbjvocF9puOiFy8EIXezuFiHSL4vWrEENsU6z-Dx9XvVUwPAq3WOP3WdKDwbfabFNO1oixfWB4m46vmZhc0QFBTcDRyQzdlxe1CWxrYU1VUlZDTx96J8As8edAI2do3w/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
