You have to pass it the name of the subject with the --s flag. The
subject name is that produced by recon-all -s subject ...
On 1/4/2025 7:30 AM, Ramesh Babu wrote:
External Email - Use Caution
Hello,
I want to register JHU-ICBM-tracts-maxprob-thr0-1mm.nii.gz with local
subject space. For this, I want to generate a registration.dat file
which will be used for registration with local subject image. But I am
facing an issue which I pasted below.
echo $SUBJECTS_DIR
/usr/local/freesurfer/subjects
bbregister --ss sample-001.mgz --mov
/usr/local/fsl/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-1mm.nii.gz
--reg registration_matrix.dat --init-fsl --dti
ERROR: Flag --ss unrecognized.
--ss sample-001.mgz --mov
/usr/local/fsl/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-1mm.nii.gz
--reg registration_matrix.dat --init-fsl --dti
I tried with -s flag, but still the same error. Could you please
provide me a solution?
Regards
Ramesh
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