External Email - Use Caution Hi Ruopeng,
It works with the app when I move the licence.txt! It doesn’t work from the terminal so far, but this helps a lot. Thank you very much! Best, Anna From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of "Wang, Ruopeng" <rwa...@mgh.harvard.edu> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Date: Friday, 3. January 2025 at 18:17 To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] [ext] Re: Freeview crash I mean /Applications/freesurfer/license.txt. On Jan 3, 2025, at 11:36 AM, Tietze, Anna <anna.tie...@charite.de<mailto:anna.tie...@charite.de>> wrote: It’s there: licence.txt located in: /Applications/freesurfer/7.4.0/license.txt (can be read, as recon-all works) Or do you mean /Applications/freesurfer/license.txt? Von: freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> <freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> Im Auftrag von Wang, Ruopeng Gesendet: Freitag, 3. Januar 2025 16:58 An: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>> Betreff: Re: [Freesurfer] [ext] Re: Freeview crash To run as an app bundle, since there is no global environment settings, you need to put the license file in /Applications/freesurfer folder. Then you should be able to load data. On Jan 3, 2025, at 12:47 AM, Tietze, Anna <anna.tie...@charite.de<mailto:anna.tie...@charite.de>> wrote: External Email - Use Caution Yes, I’ve tried that as well. Freeview opens as an app bundle, but it crashes when I load a file. Interestingly, this is inconsistent—sometimes I can load a file without any issues, but most of the time, it crashes in the same way. I’ve this problem on two different Macs: * System 1: macOS Sonoma 14.5 with FreeSurfer 7.3.2. * System 2: macOS Sonoma 14.7.1 with FreeSurfer 7.4.0. From: <freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> on behalf of "Wang, Ruopeng" <rwa...@mgh.harvard.edu<mailto:rwa...@mgh.harvard.edu>> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>> Date: Thursday, 2. January 2025 at 19:04 To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>> Subject: [ext] Re: [Freesurfer] Freeview crash Have you tried running freeview as an app bundle? Or can you try running freeview directly from the binary location? Like this: $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview On Jan 2, 2025, at 7:14 AM, Tietze, Anna <anna.tie...@charite.de<mailto:anna.tie...@charite.de>> wrote: Hi, When I want to open files with freeview, it crashes immediately. I tried my own recon-all output and the bert dataset. Can you help me? Operating system: Mac, Sonoma 14.7.1 Fressurfer version 7.4.0 XQuatz 2.8.5 licence.txt located in: /Applications/freesurfer/7.4.0/license.txt (can be read, as recon-all works) environment is set by FREESURFER_HOME=/Applications/freesurfer/7.4.0 and source $FREESURFER_HOME/SetUpFreeSurfer.sh When I run the command freeview, the following message is given: /Applications/freesurfer/7.4.0/bin/freeview: line 2: 6615 Segmentation fault: 11 $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview "$@" Or trying to open a file: freeview -v /Users/annatietze/Documents/freesurfer/freesurfer_subjects/nini_ra/mri/orig/001.mgz /Applications/freesurfer/7.4.0/bin/freeview: line 2: 6765 Segmentation fault: 11 $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview "$@" freeview -v /Applications/freesurfer/7.4.0/subjects/bert/mri/orig/001.mgz /Applications/freesurfer/7.4.0/bin/freeview: line 2: 6799 Segmentation fault: 11 $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview "$@" Attached is a detailed error report. What did I overlook?? Thank you so much for help! 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