You can use mri_surf2vol with the --mkmask option (method 2; see
mri_surf2vol --help), eg,
cd subject/surf
mri_surf2vol --mkmask --hemi lh --o mask.lh.mgz --identity subject
--template ../mri/nu.mgz
If you want to go to another volume, supply the registration to that
volume with --reg instead of using --identity
On 12/16/2024 5:13 AM, Tamir Eisenstein wrote:
External Email - Use Caution
Dear FreeSurfer experts,
Is it possible using the FS tools to create a grey-white matter
boundary binary mask in volume space (e.g., a nifti file) that will be
a single voxel thick along the entire grey-white matter boundary?
Many thanks,
Tamir
*Dr Tamir Eisenstein, Ph.D.*
*Postdoctoral Researcher*
FMRIB, Wellcome Centre for Integrative Neuroimaging
Nuffield Department of Clinical Neurosciences
John Radcliffe Hospital, Oxford OX3 9DU
University of Oxford
tamir.eisenst...@ndcn.ox.ac.uk <mailto:julien.f...@ndcn.ox.ac.uk>
_eisenta...@gmail.com <mailto:julien.f...@gmail.com>_
tel: +44 7938790763
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