Can you attach recon-all.log of a failing subject?
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Carly McIntyre-Wood
Sent: Tuesday, January 16, 2024 4:37 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Issue with mri_brainvol_stats for only some participants
External Email - Use Caution
Hi there,
I've come across a strange issue while running some new participants through
Freesurfer 7.3.
A portion of participants (30%) are missing their stats files, although I have
visually inspected the segmentation using Freeview and they look great. I have
rerun autorecon3 and it only fixes the problem for select subjects. The exact
error is below:
mris_place_surface --thickness ../surf/rh.white ../surf/rh.pial 20 5
../surf/rh.thickness
Update not needed
\n mri_brainvol_stats 1096 \n
Segmentation fault
I found one instance of this in the archives where someone recommended running:
recon-all -s subject -segstats -parcstats -parcstats2 -parcstats3 -wmparc
-balabels
However, this command exits at the same point with the same error.
Thanks so much,
Carly
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Please note that this e-mail is not secure (encrypted). If you do not wish to
continue communication over unencrypted e-mail, please notify the sender of
this message immediately. Continuing to send or respond to e-mail after
receiving this message means you understand and accept this risk and wish to
continue to communicate over unencrypted e-mail.
