Can you attach recon-all.log of a failing subject?
From: [email protected]
<[email protected]> On Behalf Of Carly McIntyre-Wood
Sent: Tuesday, January 16, 2024 4:37 PM
To: [email protected]
Subject: [Freesurfer] Issue with mri_brainvol_stats for only some participants
External Email - Use Caution
Hi there,
I've come across a strange issue while running some new participants through
Freesurfer 7.3.
A portion of participants (30%) are missing their stats files, although I have
visually inspected the segmentation using Freeview and they look great. I have
rerun autorecon3 and it only fixes the problem for select subjects. The exact
error is below:
mris_place_surface --thickness ../surf/rh.white ../surf/rh.pial 20 5
../surf/rh.thickness
Update not needed
\n mri_brainvol_stats 1096 \n
Segmentation fault
I found one instance of this in the archives where someone recommended running:
recon-all -s subject -segstats -parcstats -parcstats2 -parcstats3 -wmparc
-balabels
However, this command exits at the same point with the same error.
Thanks so much,
Carly
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