The FLAIR is only used to place the pial surfaces. If you are interested
only in WM, then it is not necessary.
On 1/3/2024 3:35 PM, aliyas...@yahoo.com wrote:
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Dear FS mailing list,
My apologies if this is a naive question. I have FLAIR images that
were acquired with much higher resolution than the T1 images for the
same subject. Does it make sense to run recon-all using FLAIR as the
input image? I tried it, and my segmentations look reasonable. I am
mainly interested in volumetric WM segmentations.
Am I missing something basic, or is there something else I can try
that leverages the FLAIR (other than using it to refine the pial
surfaces)?
Thank you.
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