Try adding --reg $SUBJECTS_DIR/fsaverage/mri.2mm/reg.2mm.dat
On 11/23/2023 2:32 AM, wangzhiwei3233 wrote:
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Dear Freesurfer Experts,
I did group-level analysis in MNI305 space. Then I output the summay
via command 'mri_volcluster' as follows:
/*mri_volcluster --in* ./sig.nii.gz *--thmin* ${thvoxel} *--sign*
${sigsignTemp} *--cwpvalthresh* 0.05 *--minsize* 273 *--fwhm 6*
*--no-adjust --sum* ${nameout}.cluster.summary*--out*
${nameout}.cluster.nii.gz *--ocn* ${nameout}.ocn.nii.gz *--labelbase*
$Dir_Subj_fMRI/$out_dir_group/$analysis/$contrast/label_${nameout}/label
*--mask*
/mnt/hgfs/G/work/MetaCog/Human/subjects/fsaverage/mri.2mm/subcort.mask.mgz/
/
/
the output is as follows. there are no ROI names in the table. Is it
because I missed the option '--reg' in the command line? Which
register file shoul I use if I should add it? I can't find the
'register.dat' file in fsaverage folder.
Very appricated if you can help me.
Best,
zhiwei
-------------------------------------------------------------
# Reporting Coordinates in Voxel Indices
# Cluster Size(n) Size(mm^3) VoxX VoxY VoxZ
Max GRFCWP
1 5270 42160.0 33.00 35.00 60.00
6.04524 0.0000001
2 1995 15960.0 15.00 65.00 24.00
4.32869 0.0008543
3 1429 11432.0 51.00 64.00 17.00
3.72032 0.0036314
4 690 5520.0 55.00 56.00 49.00
-3.22358 0.0488862
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