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I will, thanks a lot!
Best regards,
Yéléna Le Prieult
Von: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> Im Auftrag von Douglas N. Greve
Gesendet: Montag, 11. September 2023 13:54
An: freesurfer@nmr.mgh.harvard.edu
Betreff: Re: [Freesurfer] MRI analysis in Freesurfer
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Have you tried doing the tutorial? I think all these questions will be answered
there.
On 9/11/2023 7:33 AM, Le Prieult, Yéléna wrote:
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Good afternoon,
I have some questions about the analysis of the structural data in Freesurfer,
it’s the first I use this programm and I’m a bit lost. In order to do the
recon-all command, where should I put the T1 weighted images of my subjects (3
different groups with a total of 63 subjects)? Should I put them in the
subjects folder of the freesurfer folder (i.e. SUBJECTS_DIR) or should I create
a new folder in this subjects folder or should I put them elsewhere? And then
should I change the working directory on the terminal so the program can find
my subjects? And for the recon-all command itself, once the T1 images are
found, should I just write recon-all in the terminal and the preprocessing will
start?
Thanks a lot in advance for your answer! I really appreciate your help!
Have a nice day.
Best regards,
Yéléna Le Prieult
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