External Email - Use Caution
Have you tried doing the tutorial? I think all these questions will be
answered there.
On 9/11/2023 7:33 AM, Le Prieult, Yéléna wrote:
External Email - Use Caution
Good afternoon,
I have some questions about the analysis of the structural data in
Freesurfer, it’s the first I use this programm and I’m a bit lost. In
order to do the recon-all command, where should I put the T1 weighted
images of my subjects (3 different groups with a total of 63
subjects)? Should I put them in the subjects folder of the freesurfer
folder (i.e. SUBJECTS_DIR) or should I create a new folder in this
subjects folder or should I put them elsewhere? And then should I
change the working directory on the terminal so the program can find
my subjects? And for the recon-all command itself, once the T1 images
are found, should I just write recon-all in the terminal and the
preprocessing will start?
Thanks a lot in advance for your answer! I really appreciate your help!
Have a nice day.
Best regards,
Yéléna Le Prieult
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