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Hmm, can you try running
mris_info lh.white
mris_info lh.pial
and see if those work? What if you just bring up the pial and not the white?
Maybe you can put those files in a dropbox and one of us (Ruopeng?) can take a
look?
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of DS
Sent: Monday, August 7, 2023 4:00 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Use freeview to visualize white and pial surface
External Email - Use Caution
Hi expert,
I do not think it's related to RAM. When I try to load some images larger than
the image that it fails to load, it also works. So, I guess it might be related
to other issues.
PS. the current free RAM is 6GB.
Best,
Cain
At 2023-08-08 03:49:29, "Fischl, Bruce R.,PHD"
<bfis...@mgh.harvard.edu<mailto:bfis...@mgh.harvard.edu>> wrote:
External Email - Use Caution
Maybe you are at the edge of how much ram you have in that machine? How much
free memory do you have?
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
On Behalf Of DS
Sent: Monday, August 7, 2023 3:48 PM
To: Freesurfer support list
<freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: Re: [Freesurfer] Use freeview to visualize white and pial surface
External Email - Use Caution
Hi expert,
Thanks for your reply. I used the following command line.
freeview -f \
lh.white:edgecolor=blue \
lh.pial:edgecolor=red
I also tried to load these images by clicking the icons on the interface of
Freeview. But, both approaches do not work. The first image it loads just
flashed, and then it's closed when it started to load the second image. But, I
tried some images from another subject, then it works.
Best,
Cain
At 2023-08-08 03:13:52, "Fischl, Bruce R.,PHD"
<bfis...@mgh.harvard.edu<mailto:bfis...@mgh.harvard.edu>> wrote:
External Email - Use Caution
What is your freeview command line/
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
On Behalf Of DS
Sent: Monday, August 7, 2023 2:51 PM
To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Use freeview to visualize white and pial surface
External Email - Use Caution
I have a question about freeview. Recently, when I loaded lh.pial and lh.white
at the same time, the freeview was suddenly aborted and reported the following
error.
../mesa-22.0.3/src/mesa/vbo/vbo_attrib_tmp.h:234:_save_Vertex3fv: Assertion
`used_next <= save->vertex_store->buffer_in_ram_size' failed.
But, if I load lh.pial or lh.white separately, I found it's working. I guess
there might be inconsistent parameters between the two files, because when I
check another subject, both files can be visualized very well.
Do you have any thoughts about this issue? Thank you so much for any
suggestions.
PS. Previously I posted this question with the images that I use to
troubleshoot the problem. But, I received an email saying that "this message
need approval from moderator, because the files are larger than expected".
However, I never receive any update/reply from the moderator so far.
Best,
Cain
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