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Do what? If you want to run mri_sclimbic_seg, then just run something like
mri_sclimbic_seg --i input-t1.mgz --o sclimbic.mgz
On 6/21/2023 2:13 PM, Ahsan Ali wrote:
External Email - Use Caution
Dear Greve,
How did you do with this line of code? I'm getting a error, would you
please explain me with one image?
With Regards
Ahsan
---------------------------------------------
Ahsan Ali
Ph.D Scholar
Department of Applied Mechanics (Biomedical Engineering Group)
Indian Institute of Technology Madras
Chennai-600036, Tamil Nadu, INDIA
Mob.:- +91-8899605552
On Tue, 20 Jun, 2023, 6:58 pm Douglas N. Greve,
<dgr...@mgh.harvard.edu> wrote:
External Email - Use Caution
I have not used mri_cc for that. I would use mri_sclimbic_seg;
that will also segment the fornix and create a stats files that
you can use as normal
On 5/26/2023 3:37 AM, Ahsan Ali wrote:
External Email - Use Caution
Dear Sir/Madam,
I hope you are doing well. I'm having a ADNI T1 weighted MRI
database. I have run the recon-all command successfully and got a
couple of default stats files in the stats folder. Then
fornix.mgz is estimated using command "mri_cc -aseg
aseg.auto_noCCseg.mgz -o aseg.auto_CCseg.mgz -f folder_name"
successfully. Now what can be done to generate the stats for only
fornix.mgz?
I've been struggling with this for a long time, please help me
with this.
I'm using linux-ubuntu.
IMG-20230526-WA0000.jpg
With Regards
Ahsan
---------------------------------------------
Ahsan Ali
Ph.D Scholar
Department of Applied Mechanics and Biomedical Engineering (AMBE)
Indian Institute of Technology Madras
Chennai-600036, Tamil Nadu, INDIA
Mob.:- +91-8899605552
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