External Email - Use Caution Please make sure you have downloaded a freesurfer license.txt file by filling out the form at,https://secure-web.cisco.com/1jgHYKP0gy8_587mR2rxpzl3o6QwcsGjVygS8rScUOspFTxWDtMmYhVhh6hU-aNAXMR1qSecHes0FARTm1N88hQVXJ1HyCBQqYAvKw0Qa5D_vX6JKYipGqWQZB-NtPRVEg-gY-2H60q15hHSBeS8oWRBXs22WKoo_FHa42Xsbn5STf0zYCW5SWi4lZASwEZPtYTCtvtQWFQpzhPl1R2kBpPyAGuPQ6CWFX0LyZoJtXBSccps_g8oCOWXYEx7_wPfCc8EiW8PSnm7Ko48ktM35qkcOIVYy-6M5CkLgvsM6Zoo8kB3-baWzfmvJk1y1E-s1/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fregistration.html Place the license.txt file you will receive in your home directory, e.g., $ cd $HOME$ head -1 license.txt<email you used to register> Set the FS_LICENSE environment variable manually (and/or in your shell initialization file, e.g., .bashrc) to point to the license file,… here set from a terminal window running bash shell ... $ export FS_LICENSE=$HOME/license.txt
Setup the freesurfer environment, $ export FREESURFER_HOME=/Applications/freesurfer/7.4.0$ source $FREESURFER_HOME/SetUpFreeSurfer.sh-------- freesurfer-darwin-macOS-7.4.0-20230504-55dcf98 -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /Applications/freesurfer/7.4.0 FSFAST_HOME /Applications/freesurfer/7.4.0/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /Applications/freesurfer/7.4.0/subjects MNI_DIR /Applications/freesurfer/7.4.0/mni $ which freeview/Applications/freesurfer/7.4.0/bin/freeview Then try running freeview with no arguments to see if it brings up an empty window, $ freeview If that works, quit freeview and try running it again with an example volume included in the distribution, $ freeview $SUBJECTS_DIR/bert/mri/brain.mgz If that works, quit freeview and try your own surface/volume files. - R. On May 31, 2023, at 17:05, Michelangelo Fabbrizzi <michef...@gmail.com> wrote: External Email - Use Caution Dear Sirs,I am new to Freesurfer. I installed as shown on website and added the license.txt, however when I open freeview I get an error "/Applications/freesurfer/7.4.0/bin/freeview: riga 2: 2047 Segmentation fault: 11 $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview "$@“”Attached the report.Freesurfer version: freesurfer-darwin-macOS-7.4.0-20230510-e558e6ePlatform: MacOS12.6.6Mac: Macbook Pro Intel Core i5 dual-coreXQuartz2..8.15XQuartz2.8.5Can you help me please?Thanks!Michelangelo<report.txt>
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
