External Email - Use Caution Hi I have tried doing this on both version 6.0 and 7.2 and both versions show the same error
> On 30 May 2023, at 14:13, Huang, Yujing <yhuan...@mgh.harvard.edu> wrote: > > External Email - Use Caution > > > I’m wondering the Freesurfer version you are using. > > Best, > > Yujing > > From: freesurfer-boun...@nmr.mgh.harvard.edu > <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> > <freesurfer-boun...@nmr.mgh.harvard.edu > <mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> On Behalf Of Akansha Mahesh > Naraindas > Sent: Tuesday, May 30, 2023 8:22 AM > To: freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu> > Subject: [Freesurfer] Smoothing with surf2surf > > External Email - Use Caution > > Hi > I have been attempting to perform just the smoothing step on a series of > subjects using surf2surf and I seem to be getting an error when attempting to > this. > > My command is as follows > > mri_surf2surf --hemi lh \ > --s fsaverage \ > --sval combat_lh-1004.thickness.fwhm0.fsaverage.mgh \ > --fwhm 10 \ > --cortex \ > --tval combatlh.thickness.fwhm10.fsaverage.mgh > > > I get this error > ERROR: Option --sval unknown > > Based on other posts on the mailing list I tried specifying the src and trg > subjects but still receive the following error: > > > mri_surf2surf --hemi lh \ --srcsubject fsaverage \ > --srcsurfval combat_lh-1004.thickness.fwhm0.fsaverage.mgh \ --fwhm 10 \ > --trgsurfval combatlh.thickness.fwhm10.fsaverage.mgh > > > ERROR: Option --srcsubject unknown > > > I was wondering if you might be able to help resolve this issue > > > Thank you very much! > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://secure-web.cisco.com/1Us8ThV3WOHtLHYjw4YQpekwagpNh87Fs0f_471CmHtWl_xGLbFL6xRtxc-zSniB0_HU0x9lntn_F7M1BrAXxlG3sIxkj_nHP3AiNeF_wSU4Q3jtF8Nohpc5yQkDP3klwzxEoor-4QJnjfB2jfooV-Rjs6fUcbvn2L0cgJbhR-EyCq_G5pMIYznfa0UdrW_sQkEhw3DgmxOUSP_sZaQA6tpWRF3kltaVuDoTE1EM4chgiQ_Wzg1IO9PM6AYhMS1oua3kYbi8VlfNUEuGFIwEHFTG1NVDVznFscE0vPD16VuR9wD0T7AWM67dQPVMbMM4_csEUlcHY2aQ_42MK74UfbA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > > <https://secure-web.cisco.com/1Us8ThV3WOHtLHYjw4YQpekwagpNh87Fs0f_471CmHtWl_xGLbFL6xRtxc-zSniB0_HU0x9lntn_F7M1BrAXxlG3sIxkj_nHP3AiNeF_wSU4Q3jtF8Nohpc5yQkDP3klwzxEoor-4QJnjfB2jfooV-Rjs6fUcbvn2L0cgJbhR-EyCq_G5pMIYznfa0UdrW_sQkEhw3DgmxOUSP_sZaQA6tpWRF3kltaVuDoTE1EM4chgiQ_Wzg1IO9PM6AYhMS1oua3kYbi8VlfNUEuGFIwEHFTG1NVDVznFscE0vPD16VuR9wD0T7AWM67dQPVMbMM4_csEUlcHY2aQ_42MK74UfbA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General Brigham > Compliance HelpLine at > https://secure-web.cisco.com/1bRwim4wc6OylLhv9T_s9SEY0NRYGPcTRbGPrN2ZxD2NR_ZMJwHPrasaY22-SDKNkedjuNibhwHl3muB4vjOS_NxThCpcpfVRMjy4XSR96fw7CgNk_XjkhxIlo-HyIQhrrZHVBTtHqk7mOIO1iN6bvA1oqhoifcBaCImDIC3EHtOxM1i1h-ifYiSC4unOekW0BviYQas0pzDnQWKpKHI8wIFaGUqcmGKtckcVCodu7l2Dw07r_7hpBJp-088aXwiLMTNStWlyIMd27IYqKKNSvXCkhPV64_P66YwEeIRJJ1XQr0vehRp5UvbCqT442xLfMRJd8t4mf53nua5FWe5UDw/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > > <https://secure-web.cisco.com/1bRwim4wc6OylLhv9T_s9SEY0NRYGPcTRbGPrN2ZxD2NR_ZMJwHPrasaY22-SDKNkedjuNibhwHl3muB4vjOS_NxThCpcpfVRMjy4XSR96fw7CgNk_XjkhxIlo-HyIQhrrZHVBTtHqk7mOIO1iN6bvA1oqhoifcBaCImDIC3EHtOxM1i1h-ifYiSC4unOekW0BviYQas0pzDnQWKpKHI8wIFaGUqcmGKtckcVCodu7l2Dw07r_7hpBJp-088aXwiLMTNStWlyIMd27IYqKKNSvXCkhPV64_P66YwEeIRJJ1XQr0vehRp5UvbCqT442xLfMRJd8t4mf53nua5FWe5UDw/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > > <https://secure-web.cisco.com/1bRwim4wc6OylLhv9T_s9SEY0NRYGPcTRbGPrN2ZxD2NR_ZMJwHPrasaY22-SDKNkedjuNibhwHl3muB4vjOS_NxThCpcpfVRMjy4XSR96fw7CgNk_XjkhxIlo-HyIQhrrZHVBTtHqk7mOIO1iN6bvA1oqhoifcBaCImDIC3EHtOxM1i1h-ifYiSC4unOekW0BviYQas0pzDnQWKpKHI8wIFaGUqcmGKtckcVCodu7l2Dw07r_7hpBJp-088aXwiLMTNStWlyIMd27IYqKKNSvXCkhPV64_P66YwEeIRJJ1XQr0vehRp5UvbCqT442xLfMRJd8t4mf53nua5FWe5UDw/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > > <https://secure-web.cisco.com/1bRwim4wc6OylLhv9T_s9SEY0NRYGPcTRbGPrN2ZxD2NR_ZMJwHPrasaY22-SDKNkedjuNibhwHl3muB4vjOS_NxThCpcpfVRMjy4XSR96fw7CgNk_XjkhxIlo-HyIQhrrZHVBTtHqk7mOIO1iN6bvA1oqhoifcBaCImDIC3EHtOxM1i1h-ifYiSC4unOekW0BviYQas0pzDnQWKpKHI8wIFaGUqcmGKtckcVCodu7l2Dw07r_7hpBJp-088aXwiLMTNStWlyIMd27IYqKKNSvXCkhPV64_P66YwEeIRJJ1XQr0vehRp5UvbCqT442xLfMRJd8t4mf53nua5FWe5UDw/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline>> > . > Please note that this e-mail is not secure (encrypted). If you do not wish > to continue communication over unencrypted e-mail, please notify the sender > of this message immediately. Continuing to send or respond to e-mail after > receiving this message means you understand and accept this risk and wish to > continue to communicate over unencrypted e-mail.
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