External Email - Use Caution
Hi Sofia
Unfortunately that doesn't really work as the most time-intensive steps are
required. We are working on replacing some of these with deep-learning
equivalents, but it will be some months before that is available.
Sorry
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Nikolaidou, Sofia
Sent: Friday, May 12, 2023 3:34 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] recon-all for GM quantification
External Email - Use Caution
Good afternoon,
My name is Sofia and I work with Drs. Eva Ratai and Lilly Mujica-Parodi on the
DCC project. I am reaching out to ask for your advice on a FreeSurfer question.
I am using recon-all to try to quantify and compare GM volume and mean
thickness among our subjects. In essence, I think I have all the necessary
measurements in the outcome files titled aseg.stats and ?h.aparc.stats. Would
you happen to know how I can customize the stream and reduce the processing
time by taking out steps from the -all process? In other words, what would be
the minimal set of steps that I have to run in order to acquire the above
output files?
Thank you in advance!
Kindly,
Sofia
Sofia Nikolaidou | Clinical Research Coordinator
MGH/HST Martinos Center for Biomedical Imaging
149 13th St, Charlestown, MA 02129
Phone: 617-417-4463
snikolai...@mgh.harvard.edu<mailto:snikolai...@mgh.harvard.edu>
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