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Good afternoon,

My name is Sofia and I work with Drs. Eva Ratai and Lilly Mujica-Parodi on the 
DCC project. I am reaching out to ask for your advice on a FreeSurfer question.

I am using recon-all to try to quantify and compare GM volume and mean 
thickness among our subjects. In essence, I think I have all the necessary 
measurements in the outcome files titled aseg.stats and ?h.aparc.stats. Would 
you happen to know how I can customize the stream and reduce the processing 
time by taking out steps from the -all process? In other words, what would be 
the minimal set of steps that I have to run in order to acquire the above 
output files?

Thank you in advance!

Kindly,
Sofia


Sofia Nikolaidou | Clinical Research Coordinator
MGH/HST Martinos Center for Biomedical Imaging
149 13th St, Charlestown, MA 02129
Phone: 617-417-4463
snikolai...@mgh.harvard.edu
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