External Email - Use Caution That is a single command. How can you run a single command in parallel?
You can add the -parallel flag to get freesurfer to run recon-all in parallel threads. On Thu, Apr 27, 2023 at 8:16 AM Toshiharu Kamishikiryo <k5105...@gmail.com> wrote: > External Email - Use Caution > > Hello Freesurfer experts > > I am trying to recon-all using T2 images as well to improve pial > surfaces. Does anyone know how to use GNU Parallel in bash to run the > following commands in parallel? > > recon-all -subject subjectname -i /path/to/T1w.nii -T2 /path/to/T2w.nii > -T2pial -all -qcache > > Thanks in advance. > > Regards > Kamishikiryo > Research Student > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/11IT50yO70no-TpnGGtxNBPxXIXcNelFSs1XUyTzCMlINgtr3sm7O4WYroRES8v0eQiZH3S8BMK4V0GFti69voxlr-pzH2RjfZnWEeEFBghYdIZ-r0GKYSyDgLLPqf1zkbGW-ndykWIROAvpLRJad81sWkdJx-cd6Gud0iEK7f9yc0m0uglVE3TY_MwVqoVyM2jvYqgSIUeWddNAslePwHdnULqGCwE2BdyWwUt6M9o8jc9WYODKWV_fOqZWGSMd9GwHe3xUGfMBkiczHjn-Lqw1oeHF3aB_xIVbA5Fizn-H4R-0ct-ElhJ2uvizbaq9m/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > https://secure-web.cisco.com/1UVq-6A-KZL6nh8tp5FGqIx7fwuFzn0U1COgFIAP218fs4ko9LCuCYiazA0ixFn1WcGO0DmU4Lzc5U8IuaUWeWLMeY6A-SovdoXO8fjJ7yd2umlhMavZVwimFJh9_v_GYQdxiX4dq2kPJ-GAHw0NnFgzinfAeyPccMGEI6JAVI60_gLg5kJiQc1B4h21om0fayuGgk09F8EEWmPwb2-7xqRFbM8PRgyHV7ln53nXrKhhZyT5a3_En7xhjdSQboQK9hCzzSeu3clmv_GPereBSRiQa0gSV7TQvPK64I-MLSUg81y-WVR4NZehnOJJFd-o4/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > < > https://secure-web.cisco.com/1UVq-6A-KZL6nh8tp5FGqIx7fwuFzn0U1COgFIAP218fs4ko9LCuCYiazA0ixFn1WcGO0DmU4Lzc5U8IuaUWeWLMeY6A-SovdoXO8fjJ7yd2umlhMavZVwimFJh9_v_GYQdxiX4dq2kPJ-GAHw0NnFgzinfAeyPccMGEI6JAVI60_gLg5kJiQc1B4h21om0fayuGgk09F8EEWmPwb2-7xqRFbM8PRgyHV7ln53nXrKhhZyT5a3_En7xhjdSQboQK9hCzzSeu3clmv_GPereBSRiQa0gSV7TQvPK64I-MLSUg81y-WVR4NZehnOJJFd-o4/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . > Please note that this e-mail is not secure (encrypted). If you do not > wish to continue communication over unencrypted e-mail, please notify the > sender of this message immediately. Continuing to send or respond to > e-mail after receiving this message means you understand and accept this > risk and wish to continue to communicate over unencrypted e-mail. >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
