The problem is in your dicom files. They are missing Image Orientation
(0020,0037) attribute, which specifies the direction cosines of the first row
and the first column with respect to the patient. I believe you need to check
how the image was scanned/saved at the scanner.
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of MANSON ERIC NAAB
Sent: Friday, January 6, 2023 12:37 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] recon-all terminates with error
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Thank you for your quick response. Please, can you kindly assist me with
freesurfer input image template for sT1-weighted? How do I solve this
orientation problem?
Thank you.
On Fri, 6 Jan 2023, 14:34 Huang, Yujing,
<yhuan...@mgh.harvard.edu<mailto:yhuan...@mgh.harvard.edu>> wrote:
It looks like there is a problem with your input dicom file - image orientation
tag is missing.
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
On Behalf Of MANSON ERIC NAAB
Sent: Thursday, January 5, 2023 11:15 PM
To: Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] recon-all terminates with error
External Email - Use Caution
Dear FreeSurfer experts,
I am a first time FreeSurfer user trying to run a recon-all for a sT1_W image.
However, recon-all terminates with an error "tag image orientation not found" I
need help on how to resolve this.
Kindly find the recon-all.log file.
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