External Email - Use Caution Thank you for your quick response. Please, can you kindly assist me with freesurfer input image template for sT1-weighted? How do I solve this orientation problem?
Thank you. On Fri, 6 Jan 2023, 14:34 Huang, Yujing, <yhuan...@mgh.harvard.edu> wrote: > It looks like there is a problem with your input dicom file - image > orientation tag is missing. > > > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *MANSON ERIC NAAB > *Sent:* Thursday, January 5, 2023 11:15 PM > *To:* Freesurfer@nmr.mgh.harvard.edu > *Subject:* [Freesurfer] recon-all terminates with error > > > > * External Email - Use Caution * > > Dear FreeSurfer experts, > > I am a first time FreeSurfer user trying to run a recon-all for a sT1_W > image. However, recon-all terminates with an error "tag image orientation > not found" I need help on how to resolve this. > > > > Kindly find the recon-all.log file. > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1cyshhNaiz2kv9367zAck0S2C8VINgCWouegtdexAFGectdcsXx-Mtc4RHf389neaMtixuld6aFZJbTRR_Cr0OHMpMSCVgtb3zYIk4fpKCG2wpps7BCEmJD88pyv4fstNWk4SCjlZ7tp01Mgz5Dhxbib52ajsoIIExXbya0blRlQq7EgICzC_vnHrC4MWYwAFlshgoJNM0bvMvgo1JsWq1ePg_zGR6wg_zY_25lMznOrEnSZOAbeXHEJeAVFsX8xxsUjhuO-TXCsZrvaQfaYLFdXJjKC9hFGg6j0vBZg5dy9wmvpADeMThgGuEhUVUZwmlZv58GvUOxcy85Lr36vTb_8GEGQkJPN9B9q_cNGv6fc/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > https://secure-web.cisco.com/1R_7R1drwnmipruEFp9CeuohI96c58n_wwMNhxtj8NrvwpTYhG5znRFUd5FseDSfwh4KiHlvh5s2sJr7hXQAhrfA8h6_XqcD8khKN0gbnkIo9WvVHsrg93Tuy554sCLWm-o-Tl9qzsIdz7ksgrxwo6AICckx7J7tqEE3gMBiZPDQGWuY-pCgi0JZVx_qJzikFsp3QJNxg035ThncbInuC-TcDWi3X3hjFTLtEHqeRKfrDqW9Q_TOrWj5WYDqTblZJ9XJuUgHI1siHrcMdw7Ukrb77stTx4y28c3fLZck8b_uWAFCUOAkkkJN-fCYorlJ-3w1JdgrtCMpoGYMQOLhXgkVAd20hdlwu5ehIcQWYPh8/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > < > https://secure-web.cisco.com/1R_7R1drwnmipruEFp9CeuohI96c58n_wwMNhxtj8NrvwpTYhG5znRFUd5FseDSfwh4KiHlvh5s2sJr7hXQAhrfA8h6_XqcD8khKN0gbnkIo9WvVHsrg93Tuy554sCLWm-o-Tl9qzsIdz7ksgrxwo6AICckx7J7tqEE3gMBiZPDQGWuY-pCgi0JZVx_qJzikFsp3QJNxg035ThncbInuC-TcDWi3X3hjFTLtEHqeRKfrDqW9Q_TOrWj5WYDqTblZJ9XJuUgHI1siHrcMdw7Ukrb77stTx4y28c3fLZck8b_uWAFCUOAkkkJN-fCYorlJ-3w1JdgrtCMpoGYMQOLhXgkVAd20hdlwu5ehIcQWYPh8/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . > Please note that this e-mail is not secure (encrypted). If you do not > wish to continue communication over unencrypted e-mail, please notify the > sender of this message immediately. Continuing to send or respond to > e-mail after receiving this message means you understand and accept this > risk and wish to continue to communicate over unencrypted e-mail. >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
