you can run recon-all with -autorecon1 instead of -all or
you can run mri_synthstrip to get the brainmask
or you can run mri_synthseg and binarize to keep the segments you want
or you can run samseg and binarize to keep the segments you want
mri_synthstrip will probably get you where you want to be the fastest
On 10/13/2022 10:13 PM, priya padma wrote:
External Email - Use Caution
Hello Team,
I am trying to do only Skull stripping for my image and get the
output. is there any command of freesurfer, when it executes only the
first step- skull stripping. My objective is to get whole brain
segmentation where only the brain tissues should remain and all the
skull has to be removed.
I searched through the internet but haven't got anything. Does anyone
know any solution?
Thank you
--
Best Regards
Padma Priya
/AI Developer /
/
/
/PhenoMx, Inc./
/pr...@phenomx.ai | (+82)10-5405-2685/
/
/
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