Hi Mostafa
autorecon2-cp assumes that you have previously run autorecon2. What are you
trying to do here? If you just want to run through the end of autrecon2, remove
the “-cp” from your command line
cheers
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Mostafa Fakhri
Sent: Saturday, September 3, 2022 6:23 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] problem with autorecon2-cp
External Email - Use Caution
Hi Doug,
Thank You for your response
I have a new problem
I used -autorecon1 and autorecon2-cp:
recon-all -sd /share/users/mfakhri/freeSurfer-analys/subjects -subject fastWM
-i /share/users/mfakhri/freeSurfer-analys/100610_7T/T1w.nii.gz -autorecon1
-autorecon2-cp
But process was stopped after half an hour with this error:
$ cat /share/users/mfakhri/freeSurfer-analys/subjects/fastWM/mri/error.log
mghRead(/share/users/mfakhri/freeSurfer-analys/subjects/fastWM/mri/norm.mgz,
-1): could not open file
Mostafa
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Mass General Brigham
Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline
<https://www.massgeneralbrigham.org/complianceline> .
Please note that this e-mail is not secure (encrypted). If you do not wish to
continue communication over unencrypted e-mail, please notify the sender of
this message immediately. Continuing to send or respond to e-mail after
receiving this message means you understand and accept this risk and wish to
continue to communicate over unencrypted e-mail.
