Oh, sorry, mri_cc
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Sam W
Sent: Wednesday, August 31, 2022 9:57 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] midsagittal mask
External Email - Use Caution
Hi Bruce,
Thank you for the response! Which freesurfer command do I need to run with -t 0?
Best regards,
Sam
On Sat, Aug 27, 2022 at 3:44 AM Fischl, Bruce
<bfis...@mgh.harvard.edu<mailto:bfis...@mgh.harvard.edu>> wrote:
I don’t think we ever write out the mid-sagittal plane, but we do compute it
when we segment the callosum. You could set the lateral distance to extend the
callosum to 0 with -t 0 and then it will only label cc voxels in the
mid-sagittal plane
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
On Behalf Of Sam W
Sent: Friday, August 26, 2022 8:37 PM
To: Freesurfer support list
<freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: [Freesurfer] midsagittal mask
External Email - Use Caution
Hello!
I ran recon-all on my subject, is it possible to create a mask of the
midsagittal plane using freesurfer?
Best regards,
Sam
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