External Email - Use Caution Hi all,
I recently ran the hippocampal subfield segmentation script with a T2 scan. The subfield outputs make sense, however, when I was reviewing the log, I noticed this warning: makeIsotropic WARNING: not different enough, won't reslice! I also noticed four other warnings of the same kind: WARNING: Registration did not converge in 5 steps! Problem might be ill posed. Please inspect output manually! I reviewed the freesurfer email archive and found one thread where the firstwarning was discussed. I checked that my T1 and T2 are roughly aligned. Should I be concerned about the first and second warnings, or can they be ignored if: a. the outputs make sense; the script ran successfully otherwise? Specs: FreeSurfer Version: 7.1.1 Platform: Centos7 Thank you for your time! Batu Kaya PD Clinical Research Coordinator Toronto Western Hospital Neuropsychology Research Lab https://secure-web.cisco.com/1L7Dxdru2GBABYsjkqMvqWksEYscEYwKfxO6U9fKRNUW2LP_G9XZwRr2y4ge-2qgz9USqSzjuCOJLseJyB0GVqbCEyTx3VTp6M7YV5H46LIlRpAVHq565APcTOulMNoKAzmYgDD_nG1Ox1e3mOsNNj7Ls5C7qSrVI3vpri1EyobsTuuSfl8oqkqn3c5LpeKWfdAGNBVXNQu8UQLOy3LL2pXmGfX29kGZz6ezP7Vjtk1y7X4wyistPUCDmnTsB-pP2RFQRQZKXH95lTY6xHWPTPhrBQJrbT3zwfpWQa0rUeFLMZg2NswlvYUJbx3IyuozL/https%3A%2F%2Fwww.twhneuropsych.com This e-mail may contain confidential and/or privileged information for the sole use of the intended recipient. Any review or distribution by anyone other than the person for whom it was originally intended is strictly prohibited. If you have received this e-mail in error, please contact the sender and delete all copies. Opinions, conclusions or other information contained in this e-mail may not be that of the organization. If you feel you have received an email from UHN of a commercial nature and would like to be removed from the sender's mailing list please do one of the following: (1) Follow any unsubscribe process the sender has included in their email (2) Where no unsubscribe process has been included, reply to the sender and type "unsubscribe" in the subject line. If you require additional information please go to our UHN Newsletters and Mailing Lists page. Please note that we are unable to automatically unsubscribe individuals from all UHN mailing lists. Patient Consent for Email: UHN patients may provide their consent to communicate with UHN about their care using email. All electronic communication carries some risk. Please visit our website here<https://secure-web.cisco.com/1ScRcgXx1SCThEg82u6mmqhJMDzFnyTkGAc7PMhBicE4_elemuts78LIF2sTyEDE1g8RrYwr05rkw47IqnhzaMpxB2gN5C8pMaKxLTn82v06ClxDK2PDBw6jDU2uMoUm3qmTR-O_o1J7NyrIzy_OekJxoQoDP2hfghcpTyU1VhcUbfGBHuZkkf2O9_XTuwsBDbk0kqkdx1OOUfOAgEUVW005CQ0Jvg7kvncn9KWStw_VsvHoAq9LM8t27TuJFrzTUu42HI14Ut8IpsSPJCW0ZrCOKDgqwohhuaRI0kMVV-bvQIvx4Se3Ng-xYQDiExwUN/https%3A%2F%2Fwww.uhn.ca%2FPatientsFamilies%2FPatient_Safety_Advocacy%2FPrivacy%2FDocuments%2FEmail_consent_and_safety.pdf> to learn about the risks of electronic communication and how to protect your privacy. You may withdraw your consent to receive emails from UHN at any time. Please contact your care provider, if you do not wish to receive emails from UHN.
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