External Email - Use Caution        

Hi Freesurfer experts,

While trying to create a custom annotation file I get the following warning:

mris_label2annot --s sub-DAEK --a yeo2011 --no-unknown --ctab
sub-DAEK_yeoLUT.txt --ldir
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels/ --hemi rh
Reading ctab sub-DAEK_yeoLUT.txt
Number of ctab entries 105
INFO: no labels specified, generating from ctab
mris_label2anno supposed to be reproducible but seed not set
51
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_10_ROIs_1_rh_native.label
52
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_11_ROIs_1_rh_native.label
53
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_12_ROIs_1_rh_native.label
54
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_12_ROIs_2_rh_native.label
55
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_13_ROIs_1_rh_native.label
56
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_13_ROIs_2_rh_native.label
57
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_13_ROIs_3_rh_native.label
58
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_13_ROIs_4_rh_native.label
59
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_14_ROIs_1_rh_native.label
60
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_14_ROIs_2_rh_native.label
61
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_14_ROIs_3_rh_native.label
62
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_14_ROIs_4_rh_native.label
63
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_14_ROIs_5_rh_native.label
64
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_15_ROIs_1_rh_native.label
65
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_16_ROIs_1_rh_native.label
66
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_16_ROIs_2_rh_native.label
67
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_16_ROIs_3_rh_native.label
68
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_17_ROIs_1_rh_native.label
69
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_17_ROIs_2_rh_native.label
70
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_17_ROIs_3_rh_native.label
71
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_17_ROIs_4_rh_native.label
72
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_18_ROIs_1_rh_native.label
73
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_18_ROIs_2_rh_native.label
74
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_18_ROIs_3_rh_native.label
75
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_18_ROIs_4_rh_native.label
76
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_19_ROIs_1_rh_native.label
77
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_2_ROIs_1_rh_native.label
78
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_2_ROIs_2_rh_native.label
79
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_3_ROIs_1_rh_native.label
80
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_3_ROIs_2_rh_native.label
81
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_3_ROIs_3_rh_native.label
82
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_4_ROIs_1_rh_native.label
83
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_5_ROIs_1_rh_native.label
84
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_5_ROIs_2_rh_native.label
85
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_5_ROIs_3_rh_native.label
86
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_5_ROIs_4_rh_native.label
87
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_6_ROIs_1_rh_native.label
88
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_6_ROIs_2_rh_native.label
89
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_6_ROIs_3_rh_native.label
90
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_7_ROIs_1_rh_native.label
91
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_7_ROIs_2_rh_native.label
92
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_7_ROIs_3_rh_native.label
93
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_8_ROIs_1_rh_native.label
94
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_8_ROIs_2_rh_native.label
95
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_8_ROIs_3_rh_native.label
96
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_8_ROIs_4_rh_native.label
97
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_8_ROIs_5_rh_native.label
98
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_8_ROIs_6_rh_native.label
99
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_9_ROIs_1_rh_native.label
100
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_9_ROIs_2_rh_native.label
101
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_9_ROIs_3_rh_native.label
102
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_9_ROIs_4_rh_native.label
103
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_9_ROIs_5_rh_native.label
104
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels//rh.Net_9_ROIs_6_rh_native.label

7.2.0
cwd /mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels
cmdline mris_label2annot --s sub-DAEK --a yeo2011 --no-unknown --ctab
sub-DAEK_yeoLUT.txt --ldir
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels/ --hemi rh
sysname  Linux
hostname LAPTOP-LPS9CH5E
machine  x86_64
user     bdeck8317

subject sub-DAEK
hemi    rh
SUBJECTS_DIR /mnt/c/Users/Ben/freesurfer/subjects
ColorTable sub-DAEK_yeoLUT.txt
AnnotName  yeo2011
nlables 54
LabelThresh 0 0.000000
Loading /mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/surf/rh.orig
 0 1316060 Net_10_ROIs_1_rh_native
 1 14464220 Net_11_ROIs_1_rh_native
 2 14423100 Net_12_ROIs_1_rh_native
 3 11832480 Net_12_ROIs_2_rh_native
 4 9180240 Net_13_ROIs_1_rh_native
 5 8204875 Net_13_ROIs_2_rh_native
 6 10542100 Net_13_ROIs_3_rh_native
 7 9231380 Net_13_ROIs_4_rh_native
 8 9221140 Net_14_ROIs_1_rh_native
 9 14474380 Net_14_ROIs_2_rh_native
10 2763429 Net_14_ROIs_3_rh_native
11 1351760 Net_14_ROIs_4_rh_native
12 15736992 Net_14_ROIs_5_rh_native
13 6553700 Net_15_ROIs_1_rh_native
14 11146310 Net_16_ROIs_1_rh_native
15 13145750 Net_16_ROIs_2_rh_native
16 3311482 Net_16_ROIs_3_rh_native
17 2146304 Net_17_ROIs_1_rh_native
18 5935475 Net_17_ROIs_2_rh_native
19 681085 Net_17_ROIs_3_rh_native
20 23060 Net_17_ROIs_4_rh_native
21 3957760 Net_18_ROIs_1_rh_native
22 3311482 Net_18_ROIs_2_rh_native
23 1321040 Net_18_ROIs_3_rh_native
24 3276922 Net_18_ROIs_4_rh_native
25 6588260 Net_19_ROIs_1_rh_native
26 3957760 Net_2_ROIs_1_rh_native
27 50372 Net_2_ROIs_2_rh_native
28 2671812 Net_3_ROIs_1_rh_native
29 3957956 Net_3_ROIs_2_rh_native
30 6564036 Net_3_ROIs_3_rh_native
31 3945156 Net_4_ROIs_1_rh_native
32 13127690 Net_5_ROIs_1_rh_native
33 6604880 Net_5_ROIs_2_rh_native
34 2647140 Net_5_ROIs_3_rh_native
35 3937480 Net_5_ROIs_4_rh_native
36 665610 Net_6_ROIs_1_rh_native
37 50372 Net_6_ROIs_2_rh_native
38 706590 Net_6_ROIs_3_rh_native
39 5923840 Net_7_ROIs_1_rh_native
40 6579200 Net_7_ROIs_2_rh_native
41 32768 Net_7_ROIs_3_rh_native
42 25600 Net_8_ROIs_1_rh_native
43 13117500 Net_8_ROIs_2_rh_native
44 6574090 Net_8_ROIs_3_rh_native
45 51200 Net_8_ROIs_4_rh_native
46 8320 Net_8_ROIs_5_rh_native
47 25750 Net_8_ROIs_6_rh_native
48 1336330 Net_9_ROIs_1_rh_native
49 25740 Net_9_ROIs_2_rh_native
50 3983360 Net_9_ROIs_3_rh_native
51 7895160 Net_9_ROIs_4_rh_native
52 6553720 Net_9_ROIs_5_rh_native
53 25700 Net_9_ROIs_6_rh_native
Writing annot to
/mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/rh.yeo2011.annot


The annotation file looks fine, however, I am worried that this warning may
be pointing at a larger issue. Can you advise?

Thanks!

FS:   freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b
OS: WSL2 Ubuntu

-- 
*Benjamin L. Deck*
*Doctoral Student*
*Applied Cognitive and Brain Sciences*
*Department of Psychological and Brain Sciences*
*Drexel University*

<https://secure-web.cisco.com/1JUYvI6qR2KHny5pu-f9lEzMAikHDQnJEQzEy2bQcsPQ6R31G1E57iw_MMWacUoPDR7r3z6sNguRpUrLU3GQVlMp2lava51lCwBOQ7PZRs8ORpJHGPvLqf_X0rNa7lR7bnO5Ml78bnkmgqy88t6bhbXCCv4vqFmNf87yeidyVww9kgVW17xTfA4jTCqHalrgeL22LOHpgNE8I6LicUBLlWv-o8VkOMT2h-9qgNfgT4XcmlBtc7sh-L7V3rZr0aftifiJ-ZYVXsmLqfX2XHmQ_dLuPdkHkXHk681XD7HodFdD9Qm4ZF3w5lLxLEihy43NmJm0nZf30AFEcykzLm58iWA/https%3A%2F%2Fwww.avast.com%2Fsig-email%3Futm_medium%3Demail%26utm_source%3Dlink%26utm_campaign%3Dsig-email%26utm_content%3Dwebmail%26utm_term%3Dicon>
Virus-free.
http://secure-web.cisco.com/1vXe16WpLwEeffCQQEIzrJynVkOZTnYNK4zHjcPCpq_MyoNdWvrMNszmVvlfw1s2-YbzjQgv0uQROPW-MvLaQwKqd76RwbFEzQnG7g3m5sX-2c0EC1YUBnkAcCjqrju7H9jl8Algd_2ll6RvgBbNmcfVbU6qyYB-m_8xnaP7A1PbUgzoFDGZiPXSK2JyFv7DPIkqCb5KlRnyEjXMlwp1mkZeWsWgQ27VeYg600RJxrSdMXfT09HP5rCnxlcRnNZHB7hSgJQTs6XtRRZkkneNXL7q6wQ-KB4eYHekL3hnybqdWAVUl953Nln1mAMs7lU-JMhfpSs8fon12rjSJn7oXKQ/http%3A%2F%2Fwww.avast.com
<https://secure-web.cisco.com/1VFMgx5tZC9GQwomPBkbGypdqGMLfiP59efwXDTUjsVj-SjmWHMuWaIVGwYgFcgtNgW5JuBshVZQCKYNlQHkNfG9bg7a_FjYivZ4AfmZGRNvMKGBp8DznJEMB9KDEcnhD4VncRs9GDJBSpxkGe6qFm3dMLKathuEDyHLAHyeWkFEiKZVSndoeOCSvTaYH_CcQArwLlqVUA-NRkSdwqPe0uqR0r0Y8jkN-DsGW4u1gvFNJxUAmum3aiJakQ_cvw0ph_rK9dzQhJvHC-PasBeCAHyRLFM__RR7jqfZC5sEh4lHC6uLiNoG7LAtIZreNPyxGL0fDu59Mk26FMuJnYedTXw/https%3A%2F%2Fwww.avast.com%2Fsig-email%3Futm_medium%3Demail%26utm_source%3Dlink%26utm_campaign%3Dsig-email%26utm_content%3Dwebmail%26utm_term%3Dlink>
<#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2>
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is 
addressed.  If you believe this e-mail was sent to you in error and the e-mail 
contains patient information, please contact the Mass General Brigham 
Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline 
<https://www.massgeneralbrigham.org/complianceline> .
Please note that this e-mail is not secure (encrypted).  If you do not wish to 
continue communication over unencrypted e-mail, please notify the sender of 
this message immediately.  Continuing to send or respond to e-mail after 
receiving this message means you understand and accept this risk and wish to 
continue to communicate over unencrypted e-mail. 

Reply via email to