External Email - Use Caution
A quick correction: The -bigventricles flag is supported in `recon-all` and
in `samseg` but not in `infant_recon_all`, unfortunately.
-Paul
On Mon, Feb 7, 2022 at 2:17 PM Paul Wighton <p...@corticometrics.com> wrote:
> Hi Fateme,
>
> Unfortunately, `-bigventricles` isn't supported on the infant recon
> stream, that's a feature of the samseg stream.
>
> -Paul
>
> On Fri, Feb 4, 2022 at 1:58 PM Fateme Sadat Haghpanah <fh2...@columbia.edu>
> wrote:
>
>> External Email - Use Caution
>>
>> Dear FreeSurfer Developers,
>>
>> I am trying to use the InfantFS segmentation pipeline for segmenting
>> images with Ventriculomegaly. I have looked up the archive and found out
>> the -bigventricles. I have tried the following commands but it did not
>> work. Can you help me to figure out how I can segment these images with
>> infantFS?
>>
>> infant_recon_all -bigventricles --newborn --s ${SUBJ} —> ERROR: Flag
>> -bigventricles unrecognized
>>
>> Regards,
>> Fateme
>>
>> _______________________________________________
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
>> https://secure-web.cisco.com/1_Au8CfB6ydUXzsWvXhupqmsEku_NktSGGtxS_RFbPXsPlGwlQtTch-5xhuPCTbHGLnJlAEJ4x7XhaCauk5SPu59ZynElXl831I-HetZznkE520N9le3Of2DU-924XNWr9NwKQ5XeQ-ENtlF5HpwMFXyp3Tro7Iujn4AMhR8ZVRMBrebC8AMVSBtYJHqe9K-Ej-IgNZU-JW81OhxdRN1z3moQkswGUeiktRzItXo0-4Jd4YO-yYktsIeNUrK7Qs2b1ZF42Xqn27RWC_3fr5gKup-z5-qy0OMyYZ9358G7TbnuwZm3KsT_jcyElgfdE08h/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
>
>
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
