External Email - Use Caution
Hi Fateme,
Unfortunately, `-bigventricles` isn't supported on the infant recon stream,
that's a feature of the samseg stream.
-Paul
On Fri, Feb 4, 2022 at 1:58 PM Fateme Sadat Haghpanah <fh2...@columbia.edu>
wrote:
> External Email - Use Caution
>
> Dear FreeSurfer Developers,
>
> I am trying to use the InfantFS segmentation pipeline for segmenting
> images with Ventriculomegaly. I have looked up the archive and found out
> the -bigventricles. I have tried the following commands but it did not
> work. Can you help me to figure out how I can segment these images with
> infantFS?
>
> infant_recon_all -bigventricles --newborn --s ${SUBJ} —> ERROR: Flag
> -bigventricles unrecognized
>
> Regards,
> Fateme
>
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