You can run mris_preproc to get a stack of the thicknesses (one frame
for each subject), then run
mri_concat stack.mgz --mean --o mean.mgz
Then load the mean with
tksurferfv fsaverage lh inflated -aparc -ov mean.mgz -fminmax .01 3
On 1/15/2022 7:37 PM, Fischl, Bruce wrote:
Hi Rahul
If you have run the qcache stuff you can just run mri_average on all
the individual subject thickness files since they are all mapped to
fsaverage, then display them on fsaverage
Cheers
Bruce
*From:* freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Yash Patel
*Sent:* Saturday, January 15, 2022 6:44 PM
*To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
*Subject:* Re: [Freesurfer] Visualization of data
* External Email - Use Caution *
Hi Rahul,
If you fancy R… see blow
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Cheers
Yash
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On Jan 14, 2022, at 3:36 PM, Paul, Rahul <rpa...@mgh.harvard.edu>
wrote:
Hi FreeSurfer experts,
I have a dataset of 60 patients. Is there a way to visualize the
average cortical thickness/area for my dataset?
Thank you in advance.
Rahul
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