External Email - Use Caution Hi Anastasia!
I copied the contents of the fixed version directly to the trac-preproc file located in the bin and then saved it there. I attach the file located in the bin folder of freesurfer just in case I did something wrong. Thanks! Ioannis P. <https://secure-web.cisco.com/1eDOja40m2xnCFJyqacmrXr3Mxv7AgXBqNLU6ZogNPsV4ypL_VmDFT3ovsPi3F2KEn2tRYm9WJ7RGvNEp3e51R-NpDGnMjfM7t1Sm463s7pnbipErSId2uXnaoIcahNp1HI67H_i4OOIkIXvVjruZPT490yDqrz1NpJSu3YcdlVZwj6yQMja7lN-_6k_lHGqqB6RsAyxCp4GI8U6KUOYigPMf-mqa6WxEu_sk_bifQ7jkIn9tRctkjDubeAdZraiAOTAxPOfo4FEXcGnH-NXbRH8jWfr8UFOzO51VvH-rjkzkJ_CMWbZIIiy7WyXCr8RgXk3pjqSeCJtSOeiOH1vS7w/https%3A%2F%2Fwww.avast.com%2Fsig-email%3Futm_medium%3Demail%26utm_source%3Dlink%26utm_campaign%3Dsig-email%26utm_content%3Dwebmail%26utm_term%3Dicon> Virus-free. http://secure-web.cisco.com/1deH_z_inMlWKieiW-NoXxiNJsj_JPyFwKg6ryi-2pRfhCLb7u0BaH6tJIHXwGjP9avAeeoYFIVgQ10ECZ4wej0XyGmSR6nq_vB3OuDtiAdO7vAZwRy1hAJG9BiQfwTpQb-U9c7Gia8y07yj7YQ1U_muJv05KNuMNS-Hw6hHyRNGrMTi8nuBgH5T7u2EpDUnjgsnF1SpC9G0QHdQOzsG-JQ7Ru6ZP-zQUQxNKsK9OZzzYJy2yJ52pGVfAjweK8QEji2I0giNq36m7xAaf5YjAYlkeWiBT-c14aQZWKhaIIFb7y7_1VY4hYXd7LitbWX37ji1B6mLH9KyNCNKXglEEVA/http%3A%2F%2Fwww.avast.com <https://secure-web.cisco.com/1hkFX8ywsE3EnObDsfoMMV35bbXDbuKm9AsWsBTFENwQ2pWI-uinZxUtRAy2DFrKJkCPK569-sb_bW92m1qeMLllrCgMRDxWiWvevIrVqJ0wSO9jtgGK6OY_6lPZkWNpwVmpOouacfR6spyRgY6NEY5F15Xmue-THETbVPURs4JMxaufOFnXbgDzSHA3YO-itHg2HBu8LBRHE6tlXrnyLdoiuD40zDfz1mNte-xITjF7kigp3-lDSchLH7EhFp-Q-oNLmQsl5YCaQXjya8VFHAjlaHLmOTDaB2DU-sBYSx-dlRCa1pHbhJ6w2CLlM9tOsmzhcYwZGWcfAviEvIkUKeA/https%3A%2F%2Fwww.avast.com%2Fsig-email%3Futm_medium%3Demail%26utm_source%3Dlink%26utm_campaign%3Dsig-email%26utm_content%3Dwebmail%26utm_term%3Dlink> <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2> On Fri, Jan 21, 2022 at 7:54 PM Yendiki, Anastasia <ayend...@mgh.harvard.edu> wrote: > Hi Ioannis - When you run "which trac-preproc" on the command line, is the > path that you see the same as the location where you saved the new > trac-preproc? > > Anastasia. > ------------------------------ > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of John Pap < > mentad...@gmail.com> > *Sent:* Friday, January 21, 2022 10:55 AM > *To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > *Subject:* Re: [Freesurfer] Tracula -prep error: cannot stat > dwi_orig_las.1.bvecs > > > External Email - Use Caution > > That is correct! > I saved the fixed version of the trac-preproc but the problem still > remained. Everything works fine when I run the preprocessing on more than > one subject > just like you mentioned. > Any way to fix this? > Thank you for your reply! > > Ioannis P. > > > <https://secure-web.cisco.com/1g7bt-cDndS7A6vih-VxCY9CSGUDM5PwOB9Oxi8EXZSFgPl5dxBAbF-zZuHZJvKgLG4snP78-9vBDJD9nj1CDmfwDNx9eYdAD9z_mGB2HZRN7D38WTmXCjg81plC_3kcy7XUio_PLOjZp98lYtd5tCFtr9lzVPUZ8RjPXvK5CmgWI4GsnjgmPvFPZ28ADqQ9HAx-IaJ0emCXQOVAq8S4QiLeTuyRpc3g2mfIksW7ldLDpm92Fxkbg6rwTnO2iiFRe7NKfRbYw021b0qYkcgW5DJKp6_35jUuFcNnjSbWi7dlPduygnNyjeCv4viinIZ_uM4z9-oOzJH-cSZp8aoZhmg/https%3A%2F%2Fwww.avast.com%2Fsig-email%3Futm_medium%3Demail%26utm_source%3Dlink%26utm_campaign%3Dsig-email%26utm_content%3Dwebmail%26utm_term%3Dicon> > Virus-free. > *MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be* > http://secure-web.cisco.com/1deH_z_inMlWKieiW-NoXxiNJsj_JPyFwKg6ryi-2pRfhCLb7u0BaH6tJIHXwGjP9avAeeoYFIVgQ10ECZ4wej0XyGmSR6nq_vB3OuDtiAdO7vAZwRy1hAJG9BiQfwTpQb-U9c7Gia8y07yj7YQ1U_muJv05KNuMNS-Hw6hHyRNGrMTi8nuBgH5T7u2EpDUnjgsnF1SpC9G0QHdQOzsG-JQ7Ru6ZP-zQUQxNKsK9OZzzYJy2yJ52pGVfAjweK8QEji2I0giNq36m7xAaf5YjAYlkeWiBT-c14aQZWKhaIIFb7y7_1VY4hYXd7LitbWX37ji1B6mLH9KyNCNKXglEEVA/http%3A%2F%2Fwww.avast.com > <https://secure-web.cisco.com/1I81vc1_Bgueu_S1L2tfXvOJ8aoFne-kUcLDA3XPapOLg0kpPpABxro1p7r09V2jBPljSJAzKRy11fhW6eUlJMw0zIC3TV0-Zyl6GEj6tgrfyN7VDMpKBKValcGDpekXgW-n8uIIsrfGzYzuxrNP_HWULCdZi37PFQk0-H0_DQHFP7WKu58PNURfdTRpG1ZpQhJwt1jO_4TQrs4KpIZOC0nUp_3ioV-9a7XEKyUZCl_lc3-Q8EeBl1WHZzJT6cicQjBy6_O8NE6Fweqj3mtf3HdVo1_ZUTi_37uROE48DFROcmjxfOb9Lij2yGFhm1Hir4Z1MYiJF7yZU9JVxazz4jQ/https%3A%2F%2Fwww.avast.com%2Fsig-email%3Futm_medium%3Demail%26utm_source%3Dlink%26utm_campaign%3Dsig-email%26utm_content%3Dwebmail%26utm_term%3Dlink> > <#m_-4084420060666021480_m_-3336443154814653608_x_DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2> > > On Thu, Jan 20, 2022 at 6:00 AM Yendiki, Anastasia < > ayend...@mgh.harvard.edu> wrote: > > Hi Ioannis - Any chance that you're running into this previously reported > (and addressed) problem? > *MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1DOTOlBpTB6xuoSlzx00BcuQAQz_QlLHKmKpGPs8q4kFer7fVd3J9r8BmHSUVi2NZrTydlAwZd904q5zAZ6O_Acw1lULt0IJZiIaTBv89ng6JzsM-TX6S1-4v0uUEJ97iFtYfzHxaOKDFyoZCSFh7U3KHbQcSco0mjmlzpV_f6mHO0W7ojOIuLARs4JRTiKESSr2u2UkkDjWHyiaJFToDsYlSoIwNZAz9kYkuibzr9Jc-C2Q3t7qB2BlO2-Gcdi3CKxwh14hqtr5DHKkGwYRccCx9jxBvFtIkOqsc2l24Vo1Cb8i1S6EDAIBbmVotSDt1Onw517OonalFpggUQhsKwA/https%3A%2F%2Fwww.mail-archive.com%2Ffreesurfer%40nmr.mgh.harvard.edu%2Fmsg71427.html > <https://secure-web.cisco.com/14FAyoW83tF041YujgFuIkKvWm2U1SkX38EM1ORa0xOxCbcLOqulVZDLPwC1A9nWWp_PSQCrFuYzg1rAytsxJtaQDwZbCP442PS2Z-8LxQZ2PkVP_BOFaDqtmlljttVtXLt-3ElOVqyQAc04XRndM14Oh4VyZzZNMz6ljtN7Nyft84lPWovueRLeO0WPWq_d0muaRs2NQXCyZV089z5IJeNdYJ551MPdKd7US-efkcKaH-JuAjgLMQYJZhce3ChiGoMTOz1o6EN5hPdBDu_o6KYlfjO7Z-9hHSnRJmkmUZOEeYqnS9bOKnWRGM6FNK5xWFvwRJ5z-u8b7EttntVQm-g/https%3A%2F%2Fwww.mail-archive.com%2Ffreesurfer%40nmr.mgh.harvard.edu%2Fmsg71427.html> > > Anastasia. > ------------------------------ > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of John Pap < > mentad...@gmail.com> > *Sent:* Sunday, January 16, 2022 5:40 AM > *To:* freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu> > *Subject:* [Freesurfer] Tracula -prep error: cannot stat > dwi_orig_las.1.bvecs > > > External Email - Use Caution > > Hello to everyone! > > I'm trying to run the preprocessing step of tracula to my subject and I > keep getting the following error: > > mv: cannot stat > '/home/ioannis/FFF/KORO/T1_nii/trc/Subj_koro/dmri/dwi_orig_las.1.bvecs': No > such file or directory > > As a matter of fact this file was never created during the process. My > files are in nifti format and I try to reconstruct the corticospinal tracts. > I attach my configuration file and the log file. > Thanks in advance for your help! > > Ioannis P. > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > *MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1aUa1VZOk7dT7zQCuZrxzPtQ8HWHXCRB84W8KKRv0YJUfcwyPL1Ku5sqUEui58UIB52pBURlu8Tf4mNZRO2i0FhzTb015p_EYrYe3vTXySr5hzTsHOCNCmVnXgyMlgAMBISOb_AnV_TAzMnl--hWibHV-pnVyDJ0CDitzhq7B85Nxl8PyHkUc1tl2nbOB44PmInoCc_Ix3SimPk5-O95TNTrpgGpN3sY13WaJbIffcrXufXsL61TXb0sFQ3iN01YYEGJMfc01m3n447YBY4oJlu63XJ2_YxFe1ib-DxCfTHLdTxM0Cgpa50y2IBc8H1-hP2Liwd8Y-qOLXTUDUatGdg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > <https://secure-web.cisco.com/1P9CML8ExidnuK-FItSfKSp2NdEVd1G6N348i0oTDujNAUPCwa6x24zjZGqvuUX0V-2zuj8Od7x0fpC3c0L9RR0SIBmUzOANPVwXMfAmX4Hddl6Ru_71I5MH9W__LOMIbAoj8YWAh0oiyRj_6UQGr988OnQblTNl8nW0750r7ZUOrW6T6TrT8QUOqvJXhf6lAte52kNhtzTxZwMD-xy2NREyyztPZ5A63222LVMV5E-5px8XCB8pMLOiVGCHScFmhGA1O7SQWiLgJnQv0nRcltl1WcqRlaAK1_M5As_Tvmkn_jYFGWeGm51rR6tZ5XvI5mh4jJBvQQCRM2db_KUISlw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at *MailScanner has detected a possible fraud > attempt from "secure-web.cisco.com" claiming to be* > http://secure-web.cisco.com/1Wwu526990Y6c6HOIUBxN7LBM81JWMBY-EhdOze6pjRVj4un83m4y0vocTxToNPciglAZX0hPqhTN0tI4gcOGM8i9P8N8N0BRFGSgx3a4E0ktxZ-v91Ea2_4OcucrsSuhZRXCmX6NG0vuSaHvDZBEF6yVUucOwbJ4QmKcINKO1Jbwt-noPYbY9VHJQbRzmVWa5hS3lQatDt7R_0LOM4zDTP2k1qnXlG-jtTi3DI39Fe7HLaSujRgmaWvEwlMK7qQzPx7RpOlOP7o0IVGxraZtUtkGUwi0jP3K0QwXjPTCWNaz4q2JFcBgQZA9Wak8NanshGH1Lz0iV3lZJezgO367kQ/http%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > <http://secure-web.cisco.com/14OfonVMiIgifL8X0MQt9XWUBTPjads8-PcRSR5fZdxbsuQS9D8rJ4QK856GQehVGjrzevOj7oMmMaAwsJDqfUJyvuvFj3skmCMjJq1h6M0GYGqMhrohPpaP_QHNYJ2Qbo5jjxZOrTwe8WuWbbHOW5UhO1HnJGPUQrtwfW9MXKz5OEeh5FjomJEUAJS58igIndDdLjR5nlxKZXfZfv4NpLtlnMcleieJEPEnUJY3uz0AxCQZYCdUy0rbEctWnfB7SpYDlWdKScHypbNX_ueaMxfv3SD6qWxXbvaCJ4rd0Xq8MoOMCi5ZZ5hdYAHLjOQkGhn7v7FYcGEF191KwSyUw7A/http%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . If the e-mail was sent to you in error but does not contain patient > information, please contact the sender and properly dispose of the e-mail. > Please note that this e-mail is not secure (encrypted). If you do not > wish to continue communication over unencrypted e-mail, please notify the > sender of this message immediately. Continuing to send or respond to > e-mail after receiving this message means you understand and accept this > risk and wish to continue to communicate over unencrypted e-mail. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1aUa1VZOk7dT7zQCuZrxzPtQ8HWHXCRB84W8KKRv0YJUfcwyPL1Ku5sqUEui58UIB52pBURlu8Tf4mNZRO2i0FhzTb015p_EYrYe3vTXySr5hzTsHOCNCmVnXgyMlgAMBISOb_AnV_TAzMnl--hWibHV-pnVyDJ0CDitzhq7B85Nxl8PyHkUc1tl2nbOB44PmInoCc_Ix3SimPk5-O95TNTrpgGpN3sY13WaJbIffcrXufXsL61TXb0sFQ3iN01YYEGJMfc01m3n447YBY4oJlu63XJ2_YxFe1ib-DxCfTHLdTxM0Cgpa50y2IBc8H1-hP2Liwd8Y-qOLXTUDUatGdg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
trac-preproc
Description: Binary data
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
