External Email - Use Caution That is correct! I saved the fixed version of the trac-preproc but the problem still remained. Everything works fine when I run the preprocessing on more than one subject just like you mentioned. Any way to fix this? Thank you for your reply!
Ioannis P. <https://secure-web.cisco.com/1g7bt-cDndS7A6vih-VxCY9CSGUDM5PwOB9Oxi8EXZSFgPl5dxBAbF-zZuHZJvKgLG4snP78-9vBDJD9nj1CDmfwDNx9eYdAD9z_mGB2HZRN7D38WTmXCjg81plC_3kcy7XUio_PLOjZp98lYtd5tCFtr9lzVPUZ8RjPXvK5CmgWI4GsnjgmPvFPZ28ADqQ9HAx-IaJ0emCXQOVAq8S4QiLeTuyRpc3g2mfIksW7ldLDpm92Fxkbg6rwTnO2iiFRe7NKfRbYw021b0qYkcgW5DJKp6_35jUuFcNnjSbWi7dlPduygnNyjeCv4viinIZ_uM4z9-oOzJH-cSZp8aoZhmg/https%3A%2F%2Fwww.avast.com%2Fsig-email%3Futm_medium%3Demail%26utm_source%3Dlink%26utm_campaign%3Dsig-email%26utm_content%3Dwebmail%26utm_term%3Dicon> Virus-free. http://secure-web.cisco.com/1-yFtbus3Qw8Hg0WakHaQ6JPQQj5A6LQWfsQAcnFUjOeFwjjxEcZFXRSrDsLpxkRH3WFVg3nEF7khRG5XjA6Sds_TAT0nb20fXuCYw_58yT27OOXfJXHE80Hm2ygLkqx0bTJbieT7IFQTYZpICro911P0tP-AZAPn5aMmwjwDN4NYbedkfKo5YyuDL0V1VaR3kwI--Tquxxpx6621wvCH60kHxx2hGe706gM55k2F4zmF3TrbYKShzIqQrsU7JLU49-fja8viCh3PpLlWPET0c9Bzhy6zdzkHVRfJXS8z_xqWvmyaZYZ8Ke2op0e5e4ZjgZyFLt4YOXh1Dhqdw4DHvA/http%3A%2F%2Fwww.avast.com <https://secure-web.cisco.com/1I81vc1_Bgueu_S1L2tfXvOJ8aoFne-kUcLDA3XPapOLg0kpPpABxro1p7r09V2jBPljSJAzKRy11fhW6eUlJMw0zIC3TV0-Zyl6GEj6tgrfyN7VDMpKBKValcGDpekXgW-n8uIIsrfGzYzuxrNP_HWULCdZi37PFQk0-H0_DQHFP7WKu58PNURfdTRpG1ZpQhJwt1jO_4TQrs4KpIZOC0nUp_3ioV-9a7XEKyUZCl_lc3-Q8EeBl1WHZzJT6cicQjBy6_O8NE6Fweqj3mtf3HdVo1_ZUTi_37uROE48DFROcmjxfOb9Lij2yGFhm1Hir4Z1MYiJF7yZU9JVxazz4jQ/https%3A%2F%2Fwww.avast.com%2Fsig-email%3Futm_medium%3Demail%26utm_source%3Dlink%26utm_campaign%3Dsig-email%26utm_content%3Dwebmail%26utm_term%3Dlink> <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2> On Thu, Jan 20, 2022 at 6:00 AM Yendiki, Anastasia <ayend...@mgh.harvard.edu> wrote: > Hi Ioannis - Any chance that you're running into this previously reported > (and addressed) problem? > https://secure-web.cisco.com/14FAyoW83tF041YujgFuIkKvWm2U1SkX38EM1ORa0xOxCbcLOqulVZDLPwC1A9nWWp_PSQCrFuYzg1rAytsxJtaQDwZbCP442PS2Z-8LxQZ2PkVP_BOFaDqtmlljttVtXLt-3ElOVqyQAc04XRndM14Oh4VyZzZNMz6ljtN7Nyft84lPWovueRLeO0WPWq_d0muaRs2NQXCyZV089z5IJeNdYJ551MPdKd7US-efkcKaH-JuAjgLMQYJZhce3ChiGoMTOz1o6EN5hPdBDu_o6KYlfjO7Z-9hHSnRJmkmUZOEeYqnS9bOKnWRGM6FNK5xWFvwRJ5z-u8b7EttntVQm-g/https%3A%2F%2Fwww.mail-archive.com%2Ffreesurfer%40nmr.mgh.harvard.edu%2Fmsg71427.html > > Anastasia. > ------------------------------ > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of John Pap < > mentad...@gmail.com> > *Sent:* Sunday, January 16, 2022 5:40 AM > *To:* freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu> > *Subject:* [Freesurfer] Tracula -prep error: cannot stat > dwi_orig_las.1.bvecs > > > External Email - Use Caution > > Hello to everyone! > > I'm trying to run the preprocessing step of tracula to my subject and I > keep getting the following error: > > mv: cannot stat > '/home/ioannis/FFF/KORO/T1_nii/trc/Subj_koro/dmri/dwi_orig_las.1.bvecs': No > such file or directory > > As a matter of fact this file was never created during the process. My > files are in nifti format and I try to reconstruct the corticospinal tracts. > I attach my configuration file and the log file. > Thanks in advance for your help! > > Ioannis P. > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1P9CML8ExidnuK-FItSfKSp2NdEVd1G6N348i0oTDujNAUPCwa6x24zjZGqvuUX0V-2zuj8Od7x0fpC3c0L9RR0SIBmUzOANPVwXMfAmX4Hddl6Ru_71I5MH9W__LOMIbAoj8YWAh0oiyRj_6UQGr988OnQblTNl8nW0750r7ZUOrW6T6TrT8QUOqvJXhf6lAte52kNhtzTxZwMD-xy2NREyyztPZ5A63222LVMV5E-5px8XCB8pMLOiVGCHScFmhGA1O7SQWiLgJnQv0nRcltl1WcqRlaAK1_M5As_Tvmkn_jYFGWeGm51rR6tZ5XvI5mh4jJBvQQCRM2db_KUISlw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > http://secure-web.cisco.com/14OfonVMiIgifL8X0MQt9XWUBTPjads8-PcRSR5fZdxbsuQS9D8rJ4QK856GQehVGjrzevOj7oMmMaAwsJDqfUJyvuvFj3skmCMjJq1h6M0GYGqMhrohPpaP_QHNYJ2Qbo5jjxZOrTwe8WuWbbHOW5UhO1HnJGPUQrtwfW9MXKz5OEeh5FjomJEUAJS58igIndDdLjR5nlxKZXfZfv4NpLtlnMcleieJEPEnUJY3uz0AxCQZYCdUy0rbEctWnfB7SpYDlWdKScHypbNX_ueaMxfv3SD6qWxXbvaCJ4rd0Xq8MoOMCi5ZZ5hdYAHLjOQkGhn7v7FYcGEF191KwSyUw7A/http%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > . If the e-mail was sent > to you in error but does not contain patient information, please contact > the sender and properly dispose of the e-mail. > Please note that this e-mail is not secure (encrypted). If you do not > wish to continue communication over unencrypted e-mail, please notify the > sender of this message immediately. Continuing to send or respond to > e-mail after receiving this message means you understand and accept this > risk and wish to continue to communicate over unencrypted e-mail. >
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