Hi Elizabeth - If you're using launchpad, just switch to the dev version. It
has the latest bug fixes.
Happy new year!
Anastasia.
________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Kaplan, Elizabeth
<elizabeth_kap...@brown.edu>
Sent: Friday, December 31, 2021 1:56 PM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Trac-all -Prep -C Error
External Email - Use Caution
Hi All,
I am working to process DWI images using Tracula, however I am running into an
error when attempting to run the "trac-all -prep -c" command line. The error
reads:
"Error when attempting to read --index file".
I have searched through the archives for guidance and found a similar error
resolved here:
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com"
claiming to be
https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg71647.html<https://secure-web.cisco.com/1KzdCREiIOVwQ0EaQYziYkN2ydk3Fbs-8eJWpb28ohBnEBqN_s-NytvAfeAofymDDJBevFExX27DVQc-iO0IAniIvzKesS0wVfcUKfoA478NxyBGVcUttEz96t6jioGvM-VgAmgiUacusCIvLt7ODQbMRIMWZgRcVg7nVcgzn2uhgjo1F1f8CpICVUds7LL1rUFl8id9L00QZTF_rWzPu2ADK4gMAgMuqvhwokOr7Pt2eXDzwEg_DfHB1Hk5Woj7yjzQE-YJsZxY1_m9MMU3lEd7jpilkWgfXGCGr2ioBa9eBNdU-JBOH9-f_bQZILEfA/https%3A%2F%2Fwww.mail-archive.com%2Ffreesurfer%40nmr.mgh.harvard.edu%2Fmsg71647.html>
.
I attempted to save the bug fix file to my $FREESURFER_HOME/bin/ directory,
however because I am working remotely on Launchpad, I am unable to edit files
within this directory. Any suggestions on how to navigate this issue would be
greatly appreciated!
Best,
Liz
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