And you can use read_annotation.m in $FREESURFER_HOME/matlab to load it
Cheers
Bruce
-----Original Message-----
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Tim Schäfer
Sent: Monday, October 11, 2021 4:32 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Question about fsaverage
External Email - Use Caution
That file is in standard space, so if you want the Desikan parcellation, the
files you are looking for are:
* $FREESURFER_HOME/subjects/fsaverage/label/?h.aparc.annot
Best,
Tim
--
Dr. Tim Schäfer
Postdoc Computational Neuroimaging
Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy
University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany
> On 10/11/2021 3:00 AM Dongyue Zhou <zhoudong...@mail.dlut.edu.cn> wrote:
>
>
> External Email - Use Caution
>
> Dear FreeSurfer experts:
>
> I use the 'qcache' command to get the file
> '$SUBJECTS_DIR/subjectname/surf/?h.thickness.fwhm10.fsaverage.mgh'.
>
> I can get cortical thickness in each vertice by reading this file in matlab.
> And I know mean CT is computed by dividing sum CT of all ROI vertices by the
> number of ROI vertices.
>
> Is there any way I can get annot for this file in one sub?
>
>
>
>
>
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