External Email - Use Caution Dear FreeSurfer developers,
I am trying to run a group analysis to test for an association between *gray matter volume* and a behavioral measure of interest. reacon-all ran OK for all my subjects as well as mris_preproc followed by mri_surf2surf, and finally glmfit. Finally, I wanted to visualize the significant voxels using freeview and followed the command line in the tutorial of the group analysis ( https://secure-web.cisco.com/1_d3qazq-_19W6y1XEkeVPINXH5vgktFtuM1FrpU_HJNr44_3uuNvlnNfQqepHBhMKZsl9biOcmanOYEOsi5frjSB9zVZk8SeuQj5IayujrPskSPaV_zisvFp29GavDmi9FN7EGTVyLcedxcvBPYIh4YdE1wpQ9S1ahGYHbKo5fXBOMPe4Eujx-adkDYxFJnzdlt8OvwBeDaFxQqVdeOD7OpK54HEfuLrSEUe_5t224wDsiKSZpvJd_k9IiEu43Jgl_M_rTPJZ9BkEsjkWfBKzg/https%3A%2F%2Ffreesurfer.net%2Ffswiki%2FFsTutorial%2FGroupAnalysisV6.0). However, since I am talking about volume and not surface, I wasn't sure how to edit the final command to visualize my results in freeview. I want to make sure it will include significant voxels both in subcortical + cortical regions. Should I use a stats.table file as an input? As you probably understand, working with Linux and FreeSurfer are both very new to me, if it's possible, any help would be greatly appreciated. If it's relevant, these are the details of the version and platform I'm using: 1) FreeSurfer version: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 2) Platform: Ubuntu 20.04.1 LTS 3) uname -a: Linux inbal-paran 5.11.0-37-generic #41~20.04.2-Ubuntu SMP Fri Sep 24 09:06:38 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux 4) I also attached the mris_preproc log files in case it can help Kind regards, Inbal Paran -- *Inbal Paran, M.PT <http://secure-web.cisco.com/1TCV1fAKzZJ5GOMgMi06jDdgf5mlDmrjtvqzBaNtTAOycuWedE4vC_1UvecqwIebSkbIU3h5PEZFwNVgOOI0Lcz14FEkLqJnJ8ImbQSgRNAPPNlbJPJOqQNIv12LcWCKNxRPll3BIR89wAcD3kb3hsf9o85NhgI40g8Pk6sGw7RE1MpjPg1itpIG_RX4fvqJVT2K0zVIBwhcKecZiOhrc-3QJrVCLRmhkVy3yhcYptd9aRP2EZG3TPMQAo-M3lwix2CWbeZePHLE3XQCpIQoYYg/http%3A%2F%2FM.PT>.* Schwartz Movement analysis & Rehabilitation Laboratory, Physical Therapy Department, Recanati School for Community Health Professions. Faculty of Health Sciences at Ben-Gurion University of the Negev.
rh.OA_GMvolSstepthres.volume.00.mris_preproc.log
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lh.OA_GMvolSstepthres.volume.00.mris_preproc.log
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