External Email - Use Caution Hello James, In this thread from January 2021, https://secure-web.cisco.com/1_ezGYyWFKiVAojF3gcdp8pGH5ZDmCAz1KucNZh4oW5ZYOSb5S0s6OlOdb6QOpKHR6lr3k2EDBcZIMyPK0MD_7V8LhahGotAqUd0lfsi0ytR3ZdHPtaIxDOgRtGS70yi90o28Ilh9nfrhqAsONyKscWfEPZ4SP0DQywHqjn1RYSe3JA-W2roG3kK-s1h0vyrCvfSq0HJiB6ULxIOpdcFky8Q3Fs8HiOh8amFPbCvNY-_E1E7IAdtPLGJo3wHOnKZS2pQiTxjYin2Ee4zfBbpMmQ/https%3A%2F%2Fwww.mail-archive.com%2Ffreesurfer%40nmr.mgh.harvard.edu%2Fmsg68989.html, someone who got the same deployrc error was advised to try the following:Can you please remove the MCR directory and install it using the instructions found at https://secure-web.cisco.com/1euGMRsVtt4HFP_v7Lx9opw-gd8TRT1kiHLB6hHaSoy0XGzav_CXnlp_ShFOVRUQZxdZ1m5LEZjCp_irKrRuJyN6H5N4L-1WwCeF8cI8hmqBdyHgZNNfZ41octOrBc1nYcHgbgae3fq9hyv60Qg_ExuQn_JGn32eD5sHOXDbmS4PzvwCvT0DjRn12hB6CR83Z0TVz3UBRNFsa916o6V3cFlf-MhE4VsU7crRa4MdAnJfgAQ-nlLVkEo_MZcWN0N_oBLINuIwljsMOL8FrQYk8Qw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FMatlabRuntime? I think this will fix the issue.So I would take a look at that thread, and maybe give that a try if you have not already done the matlab runtime installation that way. - R. On Aug 16, 2021, at 21:57, James Allebone <james.alleb...@gmail.com> wrote: External Email - Use Caution Hello,I am trying to run the new hippocampal module. I successfully complete recon-all, but the receive the following error message when attempting to run the hippocampal module - any help would be greatly appreciated:USER developerHOST developer-VirtualBoxPROCESSID 14407 PROCESSOR x86_64OS LinuxITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS 1 Linux developer-VirtualBox 5.3.0-53-generic #47~18.04.1-Ubuntu SMP Thu May 7 13:10:50 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux------------------------------ freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b setenv SUBJECTS_DIR /usr/local/freesurfer/7.1.0-1/subjectscd /usr/local/freesurfer/7.1.0-1/subjects/usr/local/freesurfer/7.1.0-1/bin/segmentHA_T1.sh sub1#--------------------------------------------#@# Hippocampal Subfields processing (T1) left Mon Aug 16 21:52:59 EDT 2021------------------------------------------Setting up environment variables---LD_LIBRARY_PATH is .:/usr/lib/x86_64-linux-gnu:/usr/local/freesurfer/7.1.0-1/MCRv84//runtime/glnxa64:/usr/local/freesurfer/7.1.0-1/MCRv84//bin/glnxa64:/usr/local/freesurfer/7.1.0-1/MCRv84//sys/os/glnxa64:/usr/local/freesurfer/7.1.0-1/MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/usr/local/freesurfer/7.1.0-1/MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/server:/usr/local/freesurfer/7.1.0-1/MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/client:/usr/local/freesurfer/7.1.0-1/MCRv84//sys/java/jre/glnxa64/jre/lib/amd64::/usr/lib/libreoffice/programError using checkRequiredMCRProducts (line 25)Java exception occurred: java.lang.NullPointerExceptionat com.mathworks.install.InstalledProductFactory$1.execute(InstalledProductFactory.java:56)at com.mathworks.install.InstalledProductFactory$1.execute(InstalledProductFactory.java:49)at com.mathworks.install.InstalledProductFactory$InstallerWorkSpace.executeTask(InstalledProductFactory.java:193)at com.mathworks.install.InstalledProductFactory$InstallerWorkSpace.access$200(InstalledProductFactory.java:108)at com.mathworks.install.InstalledProductFactory.getInstalledProducts(InstalledProductFactory.java:67)Error in deployrc (line 9)Error in matlabrc (line 238)Command exited with non-zero status 255@#@FSTIME 2021:08:16:21:52:59 run_segmentSubjectT1_autoEstimateAlveusML.sh N 13 e 27.66 S 0.35 U 4.99 P 19% M 230080 F 1257 R 31454 W 0 c 1432 w 5142 I 386408 O 84096 L 1.33 1.10 0.95@#@FSLOADPOST 2021:08:16:21:53:27 run_segmentSubjectT1_autoEstimateAlveusML.sh N 13 1.47 1.17 0.98Linux developer-VirtualBox 5.3.0-53-generic #47~18.04.1-Ubuntu SMP Thu May 7 13:10:50 UTC 2020 x86_64 x86_64 x86_64 GNU/LinuxT1 hippocampal subfields exited with ERRORS at Mon Aug 16 21:53:27 EDT 2021-- James Allebone | MPsych, Ph.D. (Clinical Neuropsychology)Melbourne School of Psychological SciencesThe University of MelbourneFlorey Institute of Neuroscience and Mental HealthMelbourne Brain Centre, Austin Campus245 Burgundy Street, Heidelberg VIC 3084 MailScanner has detected a possible fraud attempt from "secure-web..cisco.com" claiming to be http://secure-web.cisco.com/1AQK4e4G_gYVm-sqzpIO3xlVCN5-yUUR9qW0Eg_6Rc43L0Fe3522nOKM9B0MIaYVIbtzOBJIdWJ_KP-CU19W7dmAgsxwJomJ5uD4gNkyvXCrfOJj-umXGRMGBsjt2ecg_vxdF8tUJb89yT7g1hHcRM33lpT_D_hYopVyvmrWxg9QhlV2nUvncExcN8E3hLQRQUO88qdYh3Hpi6RoTpa8pKtxQNheqIdS8HlTfyAsd5INv8wb0AFY2KsYUwEmX7Tmb7uK7f8SUToUTa9j6BwbbzA/http%3A%2F%2Fwww.florey.edu.au_______________________________________________Freesurfer mailing listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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