External Email - Use Caution Hello,
I am trying to run the new hippocampal module. I successfully complete recon-all, but the receive the following error message when attempting to run the hippocampal module - any help would be greatly appreciated: USER developer HOST developer-VirtualBox PROCESSID 14407 PROCESSOR x86_64 OS Linux ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS 1 Linux developer-VirtualBox 5.3.0-53-generic #47~18.04.1-Ubuntu SMP Thu May 7 13:10:50 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux ------------------------------ freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b setenv SUBJECTS_DIR /usr/local/freesurfer/7.1.0-1/subjects cd /usr/local/freesurfer/7.1.0-1/subjects /usr/local/freesurfer/7.1.0-1/bin/segmentHA_T1.sh sub1 #-------------------------------------------- #@# Hippocampal Subfields processing (T1) left Mon Aug 16 21:52:59 EDT 2021 ------------------------------------------ Setting up environment variables --- LD_LIBRARY_PATH is .:/usr/lib/x86_64-linux-gnu:/usr/local/freesurfer/7.1.0-1/MCRv84//runtime/glnxa64:/usr/local/freesurfer/7.1.0-1/MCRv84//bin/glnxa64:/usr/local/freesurfer/7.1.0-1/MCRv84//sys/os/glnxa64:/usr/local/freesurfer/7.1.0-1/MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/usr/local/freesurfer/7.1.0-1/MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/server:/usr/local/freesurfer/7.1.0-1/MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/client:/usr/local/freesurfer/7.1.0-1/MCRv84//sys/java/jre/glnxa64/jre/lib/amd64::/usr/lib/libreoffice/program Error using checkRequiredMCRProducts (line 25) Java exception occurred: java.lang.NullPointerException at com.mathworks.install.InstalledProductFactory$1.execute(InstalledProductFactory.java:56) at com.mathworks.install.InstalledProductFactory$1.execute(InstalledProductFactory.java:49) at com.mathworks.install.InstalledProductFactory$InstallerWorkSpace.executeTask(InstalledProductFactory.java:193) at com.mathworks.install.InstalledProductFactory$InstallerWorkSpace.access$200(InstalledProductFactory.java:108) at com.mathworks.install.InstalledProductFactory.getInstalledProducts(InstalledProductFactory.java:67) Error in deployrc (line 9) Error in matlabrc (line 238) Command exited with non-zero status 255 @#@FSTIME 2021:08:16:21:52:59 run_segmentSubjectT1_autoEstimateAlveusML.sh N 13 e 27.66 S 0.35 U 4.99 P 19% M 230080 F 1257 R 31454 W 0 c 1432 w 5142 I 386408 O 84096 L 1.33 1.10 0.95 @#@FSLOADPOST 2021:08:16:21:53:27 run_segmentSubjectT1_autoEstimateAlveusML.sh N 13 1.47 1.17 0.98 Linux developer-VirtualBox 5.3.0-53-generic #47~18.04.1-Ubuntu SMP Thu May 7 13:10:50 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux T1 hippocampal subfields exited with ERRORS at Mon Aug 16 21:53:27 EDT 2021 -- *James Allebone | **MPsych, Ph.D. (Clinical Neuropsychology)* Melbourne School of Psychological Sciences The University of Melbourne Florey Institute of Neuroscience and Mental Health Melbourne Brain Centre, Austin Campus 245 Burgundy Street, Heidelberg VIC 3084 http://secure-web.cisco.com/1N3BscAG29fPIUx3Blytu4slH8u-syFNePbcB_kngqs92OofjRU2yY04aLMXjkQeZ7DvJamfZ_wRwfm1vaHE9hOWE4ODcyaYDFHSUxyI5NJ8OLufHKWuCUPjHY0a9KM-c7vSecEOBR00T4YC_wGmu1VimgzlIAgsvWeeOREb7W-EugpVxoAaKchzBN_N7UJAy0AhmiXFBog1AcfhLzQLWP8mKMKzr220HL44MHAZ0w7jqQyxcmrCjuqz5Yd6eWfLEQAhDjVKUPqJHKS50K33Xcg/http%3A%2F%2Fwww.florey.edu.au
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer