External Email - Use Caution I should add: I've used this license file for several years wtih FS v.5.1, v5.3, v6, v7+ and developer versions. It runs FreeSurfer perfectly on two MacOS computers and on a RedHat Linux cluster where it has run thousands of recons + additional processing.
The license file continued to work -- I could run FreeSurfer commands with it and it never reported a missing or unreadable license file. So if you are getting segfaults and you think you have a good license -- try requesting a new one just in case. On Mon, Aug 2, 2021 at 10:10 AM Adam Martersteck <acmar...@gmail.com> wrote: > Confirm, just requesting a new license file fixed my FreeView MacOS 11.4 > segfault errors. > > Requesting a new license file with my same credentials produced an > identical text file (same email, same license #, same two strings of random > letter/digit/symbols). > > *I didn't even need to download the new license file* (as the identical > one was already present) or move it into the /Applications/freesurfer/7.2.0 > directory -- FreeView just began to work perfectly fine with my previously > present license. > > This fixed my unusable FreeView in /Applications/freesurfer/7.1.1/ also. > Same license file was present there, never needed to download the newly > requested one. Just the *act of requesting a new license file fixed it*. > > Strange, right? Doesn't sound like a Mac OS permission problem, sounds > like an issue with my license registration? > > > On Mon, Aug 2, 2021 at 4:41 AM fsbuild <fsbu...@contbay.com> wrote: > >> External Email - Use Caution >> >> After some feedback and some more testing, I can reproduce that >> freeview.app in the 7.2.0 release will segfault on MacOS 11.4 if the >> license file cannot be found or it cannot be read. One user reported that >> he had to get a new license file in order for it to work. The link for >> that is here, >> https://secure-web.cisco.com/1ET788Mna2WVAEWKpm4YiU1xXU3qn8bJGFhxXkO9s6jJXdtKLbhrUhl8OTrwNFjiqhXcjsJb86Yz-6R-DTgfHSEAzWDL0QgznDOjerB7-xv-KJYP9ECT_vGza0i7LICmv8c0YsLHQn7E8y2Bl3u8WH2t_ntW9Bbu7Zowx9ubjV4nrif-rv2oBgs3t4dO1En3qw4YxfrHuldvBQUvKX32TAyKrafsDcqI42e4hmx1fb3P-FTEwsLgeSqUyPcDTSVwcYI51XgdwgrICJqOfSNQtzQ/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fregistration.html >> >> - R.. >> >> On Jul 29, 2021, at 14:34, Adam Martersteck <acmar...@gmail.com> wrote: >> >> External Email - Use Caution >> >> Here's a log from a completely clean install of FreeSurfer 7.2.0. >> >> On an Intel processor MacBook Pro, running macOS Big Sur (11.4). >> >> __Starting with a completely clean install of FreeSurfer 7.2.0__ >> Copied license file over from 7.1.1. >> (Confirmed license file works by running mri_convert) >> >> MacBook-Pro:freesurfer adam$ freeview >> /Applications/freesurfer/7.2.0/bin/freeview: line 2: 38945 Segmentation >> fault: 11 $FREESURFER_HOME/Freeview..app/Contents/MacOS/freeview "$@" >> MacBook-Pro:freesurfer adam$ freeview >> /Applications/freesurfer/7.2.0/bin/freeview: line 2: 38951 Segmentation >> fault: 11 $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview "$@" >> MacBook-Pro:freesurfer adam$ freeview >> /Applications/freesurfer/7.2.0/bin/freeview: line 2: 38954 Segmentation >> fault: 11 $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview "$@" >> MacBook-Pro:freesurfer adam$ freeview >> /Applications/freesurfer/7.2.0/bin/freeview: line 2: 38974 Segmentation >> fault: 11 $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview "$@" >> MacBook-Pro:freesurfer adam$ freeview >> /Applications/freesurfer/7.2.0/bin/freeview: line 2: 38977 Segmentation >> fault: 11 $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview "$@" >> >> (Line numbers that it faults at are linearly increasing?) >> >> With export QT_DEBUG_PLUGINS=1 >> >> I have attached the output log from "freeview >> > freeview_QT_DEBUG_log.txt". >> The tail of it is: >> " >> loaded library >> "/Applications/freesurfer/7.2.0/Freeview.app/Contents/PlugIns/imageformats/libqtiff.dylib" >> loaded library >> "/Applications/freesurfer/7.2.0/Freeview.app/Contents/PlugIns/imageformats/libqwbmp.dylib" >> loaded library >> "/Applications/freesurfer/7.2.0/Freeview.app/Contents/PlugIns/imageformats/libqwebp.dylib" >> /Applications/freesurfer/7.2.0/bin/freeview: line 2: 39147 Segmentation >> fault: 11 $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview "$@" >> " >> >> It perfectly replicates in FreeSurfer 7.1.1. Same error, same debug log. >> >> -Adam >> >> On Wed, Jul 28, 2021 at 8:53 PM fsbuild <fsbu...@contbay.com> wrote: >> >>> External Email - Use Caution >>> >>> >>> If you have not already done so, see if you get a different result by >>> double clicking on the Freeview.app icon under >>> /Applications/freesurfer/7.2.0 with the mouse. >>> >>> You can try this variation on what's been previously suggested. >>> >>> 1) run a bash shell >>> $ bash >>> >>> 2) setup freesurfer environment >>> $ export FREESURFER_HOME=/Applications/freesurfer/7.2.0 >>> $ source $FREESURFER_HOME/SetUpFreeSurfer.sh >>> >>> -------- freesurfer-darwin-macOS-7.2.0-20210713-aa8f76b -------- >>> Setting up environment for FreeSurfer/FS-FAST (and FSL) >>> FREESURFER_HOME /Applications/freesurfer/7.2..0 >>> FSFAST_HOME /Applications/freesurfer/7.2.0/fsfast >>> FSF_OUTPUT_FORMAT nii.gz >>> SUBJECTS_DIR /Applications/freesurfer/7.2.0/subjects >>> MNI_DIR /Applications/freesurfer/7.2.0/mni >>> >>> 3) Locate your license file (I name mine license.txt) in your home >>> directory and check you can read its contents, >>> $ export FS_LICENSE=$HOME/license.txt >>> $ cat $FS_LICENSE >>> ... check the output ... >>> ... first line should contain email address ... >>> ... followed by 3 more lines ... >>> >>> 4) set environment variable for debug >>> $ export QT_DEBUG_PLUGINS=1 >>> >>> 5) run freeview with no arguments >>> $ which freeview >>> /Applications/freesurfer/7.2.0/bin/freeview >>> $ freeview >>> >>> ... an empty freeview window should appear and persist on the screen ... >>> >>> At this point the last few lines of output in the terminal window should >>> now be: >>> >>> Got keys from plugin meta data ("svg", "svgz", "svg.gz") >>> QFactoryLoader::QFactoryLoader() checking directory path >>> "/Applications/freesurfer/7.2.0/Freeview.app/Contents/MacOS/iconengines" >>> .... >>> QFactoryLoader::QFactoryLoader() checking directory path >>> "/Applications/freesurfer/7.2.0/Freeview.app/Contents/PlugIns/accessible" >>> ... >>> QFactoryLoader::QFactoryLoader() checking directory path >>> "/Applications/freesurfer/7.2.0/Freeview.app/Contents/MacOS/accessible" ... >>> >>> 6) Use the freeview application "File" pull down menu to select "load >>> volume". In the window that comes up, click on the yellow folder icon to >>> the r.h.s of the folder/file entry box under "Select Volume File". In the >>> Finder window that comes up, navigate to >>> /Applications/freesurfer/7.2.0/subjects/bert/mri and select the brain.mgz >>> file.. Click on OPEN. That path/filename will appear in the load volume >>> text entry box. Don't check/change any of the options for loading the >>> volume and click OK. >>> >>> The steps above worked for me to load that volume using an Intel MacPro >>> laptop with the 7.2.0 release running under either MacOS 10.15.7 (Catlaina) >>> or MacOS 11.4 (Big Sur) w/o freeview exiting or producing any further >>> output in the terminal window. If it fails on your machine, you could send >>> along the Qt debug output after the lines listed above. Please do not send >>> the output from cat'ing your license file though.. >>> >>> - R. >>> >>> On Jul 28, 2021, at 14:53, fsbuild <fsbu...@contbay.com> wrote: >>> >>> External Email - Use Caution >>> >>> Please check in “energy saver” preferences that “automatic graphics >>> switching” is not selected so that high performance graphics is always used. >>> >>> - R. >>> >>> On Jul 28, 2021, at 14:36, Sahil Bajaj <sahil.br...@gmail.com> wrote: >>> >>> External Email - Use Caution >>> >>> Hi Freesurfer team, >>> >>> I am also having a similar issue from the last few weeks. I hope we will >>> get a solution soon. >>> >>> Thanks, >>> Sahil >>> >>> On Wed, Jul 28, 2021 at 11:15 AM Tom Parker <tomparke...@gmail.com> >>> wrote: >>> >>>> External Email - Use Caution >>>> >>>> I have just installed Freesurfer 7.2.0 for Mac. When I attempt to open >>>> Freeview it crashes. Full details of error messages below. >>>> >>>> Any advice to correct would be much appreciated. >>>> >>>> Many thanks! >>>> >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> *MailScanner has detected a possible fraud attempt from >>>> "secure-web.cisco.com" claiming to be* >>>> https://secure-web.cisco.com/1GqlgzKh34tJI9Zc4owgLXI8g_4X3DtfSFD54R3dKViB4xrPVEYZV3mKutPFZT88iDvTVumSeP_SEJzkxqbPGOWvI9Lh_R5WV6vhNEnFi6hRdHZ7f8JGD9MQa6caZwL4jlEUBYV2sUk1yf980oYbEf_eCuUOWDulFpbp95kN4tJnot2kVeqwOhc1BAZm2GUw9wvhp_VWZSref6x-ORaaMA-omy-B3NQ07XluEFNGdFEf04nPyETMgs-8Mq-9gq9yLqHdJ7JRka8bmo0vdG24bjg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >>>> <https://secure-web.cisco.com/1t1kuIF7XgQYTpBRMwhddkd-yOxfUwwwvnaK_M_D_bGquaLgl2i1hE9k6Xkv3DEawq9f4KUm6g4F6zzMrRT8pK2X6E4VdvUmrnVH6atV2_9bJGjVAnjPCMwTdUdwalVncBCiLxXVUSeU8cI7JM8cDrLtmXlj7gCcQM210FcX7Q6PMELupUfyBMr1zjmt_CKh-OOHsu4NVifIBWr812nQVqfwiWX-eTRWggOVMfEyAkhJ_r0zH_L1EUlW4fGVADHFMrHRcJQp5WzKgs6Y7-9o0Aw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> *MailScanner has detected a possible fraud attempt from >>> "secure-web.cisco.com" claiming to be* >>> https://secure-web.cisco.com/1GqlgzKh34tJI9Zc4owgLXI8g_4X3DtfSFD54R3dKViB4xrPVEYZV3mKutPFZT88iDvTVumSeP_SEJzkxqbPGOWvI9Lh_R5WV6vhNEnFi6hRdHZ7f8JGD9MQa6caZwL4jlEUBYV2sUk1yf980oYbEf_eCuUOWDulFpbp95kN4tJnot2kVeqwOhc1BAZm2GUw9wvhp_VWZSref6x-ORaaMA-omy-B3NQ07XluEFNGdFEf04nPyETMgs-8Mq-9gq9yLqHdJ7JRka8bmo0vdG24bjg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >>> <https://secure-web.cisco.com/1QLw3KeluW_bEzIDPhPT9faqoleG2__3MCagK-6vum3UeQJ9qPUFYrvOFahJXyvwKKHRj68h1TtDRztMfQXV75vgJKxR-1kNXo2mRseNbcyjX2l3U8eLawMfbDfXgSEHjtkh-gmeFhco9O4rM9Q48hKOzqkfgxFG8OWyEAQGIXiw71PYK4Enf0oWaWlF4LQZ70yLKPaJaLV8FfEfj8GymyapIVFWRJKDmY9t8BPOUQ4ZaZOxpqMm_JN8PRpnFOjHSQq1WxYI7DaV3MCn6KVlL3A/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> *MailScanner has detected a possible fraud attempt from >>> "secure-web.cisco.com" claiming to be* >>> https://secure-web.cisco.com/1GqlgzKh34tJI9Zc4owgLXI8g_4X3DtfSFD54R3dKViB4xrPVEYZV3mKutPFZT88iDvTVumSeP_SEJzkxqbPGOWvI9Lh_R5WV6vhNEnFi6hRdHZ7f8JGD9MQa6caZwL4jlEUBYV2sUk1yf980oYbEf_eCuUOWDulFpbp95kN4tJnot2kVeqwOhc1BAZm2GUw9wvhp_VWZSref6x-ORaaMA-omy-B3NQ07XluEFNGdFEf04nPyETMgs-8Mq-9gq9yLqHdJ7JRka8bmo0vdG24bjg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >>> <https://secure-web.cisco.com/1Kedvuo4iWeliWYz243T7FMJA3mrmnb_6kGyoerF8tSq8SB-pL2lNqd-fV1-75N9Vk9lSQi43c2x4EsfDduGo0JKzcexLldAiIKnwZsjrbqqfgTEiF-naStbWuLvUoGsxxg_9m3TiK0ynZzVkTwjbBbXUOcC3tcMix-v2ixKeen3jF8IlpL8wewdhZI3CdEaEP9OFG6g3rwLsUrOoD9nYxmIizHMeli-Yh-qi5WLnOURuKo8Ho9LB7FaFuQ4_B-NPuq-E5bfxNE8LJPZgY4zpWg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> *MailScanner has detected a possible fraud attempt from >>> "secure-web.cisco.com" claiming to be* >>> https://secure-web.cisco.com/1GqlgzKh34tJI9Zc4owgLXI8g_4X3DtfSFD54R3dKViB4xrPVEYZV3mKutPFZT88iDvTVumSeP_SEJzkxqbPGOWvI9Lh_R5WV6vhNEnFi6hRdHZ7f8JGD9MQa6caZwL4jlEUBYV2sUk1yf980oYbEf_eCuUOWDulFpbp95kN4tJnot2kVeqwOhc1BAZm2GUw9wvhp_VWZSref6x-ORaaMA-omy-B3NQ07XluEFNGdFEf04nPyETMgs-8Mq-9gq9yLqHdJ7JRka8bmo0vdG24bjg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >>> <https://secure-web.cisco.com/1raESC1mWjjNJJcfvJRWM_b7Wmas4O-dJQFO3Fzt2eqbkmoA0t6tcqedFXJe-QTEdFxvYSOc6nZUeNE_W2eZxhXzfckOvXYQzAq5mylDaUP7U7ekUoWsjuxHQyq0BvES7Hxx76XCTLa1AxRvoYVAMD5BE14A-YGaVs9MZwbZ2TuSGUen0_H_AL1dvpdDh8LyyAgasjsfXaFmcyAtYxHynmhUT3lbaqFJk0FkQaE07qdsvxgc9BjEixfFxNRHltXI0EcZSLMLhcJaUsr6mnWOoLQ/https%3A%2F%2Fsecure-web.cisco..com%2F1Kedvuo4iWeliWYz243T7FMJA3mrmnb_6kGyoerF8tSq8SB-pL2lNqd-fV1-75N9Vk9lSQi43c2x4EsfDduGo0JKzcexLldAiIKnwZsjrbqqfgTEiF-naStbWuLvUoGsxxg_9m3TiK0ynZzVkTwjbBbXUOcC3tcMix-v2ixKeen3jF8IlpL8wewdhZI3CdEaEP9OFG6g3rwLsUrOoD9nYxmIizHMeli-Yh-qi5WLnOURuKo8Ho9LB7FaFuQ4_B-NPuq-E5bfxNE8LJPZgY4zpWg%2Fhttps%253A%252F%252Fmail.nmr.mgh.harvard.edu%252Fmailman%252Flistinfo%252Ffreesurfer> >> >> <freeview_QT_DEBUG_log.txt> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> *MailScanner has detected a possible fraud attempt from >> "secure-web.cisco.com" claiming to be* >> https://secure-web.cisco.com/1GqlgzKh34tJI9Zc4owgLXI8g_4X3DtfSFD54R3dKViB4xrPVEYZV3mKutPFZT88iDvTVumSeP_SEJzkxqbPGOWvI9Lh_R5WV6vhNEnFi6hRdHZ7f8JGD9MQa6caZwL4jlEUBYV2sUk1yf980oYbEf_eCuUOWDulFpbp95kN4tJnot2kVeqwOhc1BAZm2GUw9wvhp_VWZSref6x-ORaaMA-omy-B3NQ07XluEFNGdFEf04nPyETMgs-8Mq-9gq9yLqHdJ7JRka8bmo0vdG24bjg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >> <https://secure-web.cisco.com/1_nuzaEPCTI87b7j_N9p0SOPU-l-ErJXYTKGSzE-FZutyRbPHWKWV7MJoAWE2eI_gd6ogqcuf5GnM13y2x48R_Y7ghuXKLrFOxWh-V0g2cS9-HpL6hW6PizNayXg5gEGnpgWU_NizPJZ8dBfPOtHmdvINaHG5JRkn6Tb7AQPSylWjSw1a4E_6j3GsbN-vzWUwqpY5hhuL4eMVa5YHpNra-dFKgd49WXSAHSJ0JDkjGynPMxB7IRXgl8w8X1dYIG3skgMxMEIqUHu8vTCfesYxkA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://secure-web.cisco.com/1GqlgzKh34tJI9Zc4owgLXI8g_4X3DtfSFD54R3dKViB4xrPVEYZV3mKutPFZT88iDvTVumSeP_SEJzkxqbPGOWvI9Lh_R5WV6vhNEnFi6hRdHZ7f8JGD9MQa6caZwL4jlEUBYV2sUk1yf980oYbEf_eCuUOWDulFpbp95kN4tJnot2kVeqwOhc1BAZm2GUw9wvhp_VWZSref6x-ORaaMA-omy-B3NQ07XluEFNGdFEf04nPyETMgs-8Mq-9gq9yLqHdJ7JRka8bmo0vdG24bjg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
