Dear Franchesca, Could you please attach some images illustrating the problem? Cheers, /Eugenio
Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com On Jul 9, 2021, at 13:06, Franchesca Kuhney <fkuh...@uic.edu<mailto:fkuh...@uic.edu>> wrote: External Email - Use Caution Hello, I've run into an issue with the longitudinal hippocampus/amygdala segmentation (segmentHA_T1_long.sh). All of the commands ran properly and I got the outputs listed on the FreeSurfer wiki but, upon QAing the segmentations, I realized that a few subjects hippocampal segmentations were a poor fit. It appears that the segmentation includes their parahippocampal gyrus. I'm wondering if you have any recommendations for how to fix these either manually or automatically? Thank you! Kindly, Franchesca Franchesca Kuhney, M.A. (she/her) Clinical Psychology Doctoral Student University of Illinois at Chicago Behavioral Sciences Building | Rm 3019 1007 W. Harrison St. | Chicago, IL 60607 [https://secure-web.cisco.com/1puxmEK3mDm56IT5JV-3zOLSqMv5RYqFgYmoHYrQAp5MYBlH0FXgFmM2N6W2VgtUPqMnfqlwxhCUv48gthl3zpOFiFLDXBi-4UJn9X_iohYJ1MZ77rnkRSf-6io9SHkp51H6LTDgc9AVbUnDsOaOpjELnIyceWsALuSm9SvfwsWWxk2Fgy5XW_lQaQWtUnrvFhp5lGHL-Us4-ypqNv2jHbdT6cj1v1zyi-_8nePwm054SFDv4xbrcB67amiyHtbWyZra43v0abbt1OA_yPlZbbQ/https%3A%2F%2Fdrive.google.com%2Fa%2Fuic.edu%2Fuc%3Fid%3D1R1NXIxIFqUxTPkk1dgc36H1tbzYr63aH%26export%3Ddownload] ----- Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues. The information included in the email may be confidential and is meant only for the use of the intended recipient. If you received this communication in error, please notify the sender immediately and destroy the original information. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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