Hi Harriet
Is that a parcellation overlaid on the brain? Usually this means something was
not regenerated when you reran (like the parcellation). Try just recreating it
an see if it fixes your problems. Should just take a couple of min to run just
the parcellation stage
Cheers
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Harriet Cornwell
Sent: Friday, June 18, 2021 9:54 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] External 3D View Issue
External Email - Use Caution
External Email - Use Caution
Hello,
We thought we had finished manually editing a T1 scan and so opened it in the
external 3D view to perform final checks and it looks incredibly messy (see
attached screenshot). Are you able to advise whether this is an issue? If so,
is it possible to fix it and, if it can be fixed, how we should go about doing
so? Also, do you have any idea what might have caused this to happen?
Thank you in advance!
Harriet Cornwell
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Mass General Brigham
Compliance HelpLine at http://www.massgeneralbrigham.org/complianceline . If
the e-mail was sent to you in error but does not contain patient information,
please contact the sender and properly dispose of the e-mail.
Please note that this e-mail is not secure (encrypted). If you do not wish to
continue communication over unencrypted e-mail, please notify the sender of
this message immediately. Continuing to send or respond to e-mail after
receiving this message means you understand and accept this risk and wish to
continue to communicate over unencrypted e-mail.
