Try removing the trailing slash from the subject name, ie,
10100_S2654UFQ, not 10100_S2654UFQ/
On 5/26/2021 1:18 PM, Zeng, Victor (BIDMC - Keshavan - Psychiatry) wrote:
Hi all,
I am trying to extract LGI measures as prescribed in *MailScanner has
detected a possible fraud attempt from "secure-web.cisco.com" claiming
to be* https://surfer.nmr.mgh.harvard.edu/fswiki/LGI
<https://secure-web.cisco.com/17RNO0jXsWejJpXwwC1TbKXfwLIWB9IY53g1Ab5f3XjIUVS7ug_ENRyR0oKEd3p89IXZY-0SVCOfgci40rJTREeScHc-jgAjDUkzFxtfqiD1PG-T53a5a2jtNNhX-pzy98TWJjaRFSXoAY0eamt-BSbzcW4n31uTbXw1lmQPhFIQowFXuB4U5E5RsaZxMFnXlPzziFzOLEqlArwrmXrRdRBHr7ySldrVsrNhm3cPDJw2hSEmh8E8p77BGwsNtn0ZBQ1WnpjLa119Ai7GlK0-okg/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FLGI>
So I follow this:
mri_segstats --annot my_subject_id lh aparc --i
$SUBJECTS_DIR/my_subject_id/surf/lh.pial_lgi --sum lh.aparc.pial_lgi.stats
but receive this error (I have also tried in root):
7.1.0
cwd
cmdline mri_segstats --annot 10100_S2654UFQ/ lh aparc --i
/mnt/V/Datasets/BSNIP2/Processing/temp/10100_S2654UFQ/surf/lh.pial_lgi
--sum lh.aparc.pial_lgi.stats
sysname Linux
hostname Alpha
machine x86_64
user victor
whitesurfname white
UseRobust 0
Constructing seg from annotation
Reading annotation
/mnt/V/Datasets/BSNIP2/Processing/temp/10100_S2654UFQ//label/lh.aparc.annot
reading colortable from annotation file...
colortable with 36 entries read (originally
/autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
Seg base 1000
error: No such file or directory
error:
CTABwriteFileASCII(/tmp/mri_segstats.tmp.10100_S2654UFQ/.lh.176.ctab):
could not open for writing
error: No such file or directory
error:
CTABreadASCII(/tmp/mri_segstats.tmp.10100_S2654UFQ/.lh.176.ctab):
could not open file
ERROR: reading /tmp/mri_segstats.tmp.10100_S2654UFQ/.lh.176.ctab
Is this something that I can fix?
Victor Zeng
Beth Israel Deaconess Medical Center
Keshavan Lab
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