Hi all,
I am trying to extract LGI measures as prescribed in https://secure-web.cisco.com/17RNO0jXsWejJpXwwC1TbKXfwLIWB9IY53g1Ab5f3XjIUVS7ug_ENRyR0oKEd3p89IXZY-0SVCOfgci40rJTREeScHc-jgAjDUkzFxtfqiD1PG-T53a5a2jtNNhX-pzy98TWJjaRFSXoAY0eamt-BSbzcW4n31uTbXw1lmQPhFIQowFXuB4U5E5RsaZxMFnXlPzziFzOLEqlArwrmXrRdRBHr7ySldrVsrNhm3cPDJw2hSEmh8E8p77BGwsNtn0ZBQ1WnpjLa119Ai7GlK0-okg/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FLGI So I follow this: mri_segstats --annot my_subject_id lh aparc --i $SUBJECTS_DIR/my_subject_id/surf/lh.pial_lgi --sum lh.aparc.pial_lgi.stats but receive this error (I have also tried in root): 7.1.0 cwd cmdline mri_segstats --annot 10100_S2654UFQ/ lh aparc --i /mnt/V/Datasets/BSNIP2/Processing/temp/10100_S2654UFQ/surf/lh.pial_lgi --sum lh.aparc.pial_lgi.stats sysname Linux hostname Alpha machine x86_64 user victor whitesurfname white UseRobust 0 Constructing seg from annotation Reading annotation /mnt/V/Datasets/BSNIP2/Processing/temp/10100_S2654UFQ//label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Seg base 1000 error: No such file or directory error: CTABwriteFileASCII(/tmp/mri_segstats.tmp.10100_S2654UFQ/.lh.176.ctab): could not open for writing error: No such file or directory error: CTABreadASCII(/tmp/mri_segstats.tmp.10100_S2654UFQ/.lh.176.ctab): could not open file ERROR: reading /tmp/mri_segstats.tmp.10100_S2654UFQ/.lh.176.ctab Is this something that I can fix? Victor Zeng Beth Israel Deaconess Medical Center Keshavan Lab -- ________________________________ This message is intended for the use of the person(s) to whom it may be addressed. It may contain information that is privileged, confidential, or otherwise protected from disclosure under applicable law. If you are not the intended recipient, any dissemination, distribution, copying, or use of this information is prohibited. If you have received this message in error, please permanently delete it and immediately notify the sender. Thank you.
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