External Email - Use Caution After 14th interaction the terminal wrote this message:
I tensorflow/core/platform/cpu_feature_guard.cc:141] Your CPU supports instructions that this TensorFlow binary was not compiled to use: AVX2 2021-05-10 13:40:01.273046: I tensorflow/core/platform/profile_utils/cpu_utils.cc:94] CPU Frequency: 3292375000 Hz 2021-05-10 13:40:01.281440: I tensorflow/compiler/xla/service/service.cc:150] XLA service 0x30013a0 executing computations on platform Host. Devices: 2021-05-10 13:40:01.281470: I tensorflow/compiler/xla/service/service.cc:158] StreamExecutor device (0): <undefined>, <undefined> WARNING:tensorflow:From /usr/local/freesurfer/python/lib/python3.6/site-packages/tensorflow/python/training/saver.py:1266: checkpoint_exists (from tensorflow.python.training.checkpoint_management) is deprecated and will be removed in a future version. Instructions for updating: Use standard file APIs to check for files with this prefix. VAE lesion model loaded 2021-05-10 13:40:16.471711: W tensorflow/core/framework/allocator.cc:124] Allocation of 1717200000 exceeds 10% of system memory. I tried to improve the system memory of my virtual machine but the same error appeared. Any suggestions? El vie, 7 may 2021 a las 20:59, Hoopes, Andrew (<ahoo...@mgh.harvard.edu>) escribió: > If the output directory is missing seg.mgz, then samseg failed. You’ll > have to send us the log or some sort of information about the error for us > to debug this. > > > > Best > > Andrew > > > > *From: *freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Alberto Del Cerro > Leon <bertocer...@gmail.com> > *Date: *Friday, May 7, 2021 at 6:49 AM > *To: *Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > *Subject: *[Freesurfer] Error in SAMSEG preprocessing > > * External Email - Use Caution * > > Hello, I am trying to use SAMSEG to segment white matter lesions, I ran > the following command: > > > > run_samseg --input '/home/neuroimage/fsl/vascular/1002/U1002_3DT1.nii' > '/home/neuroimage/fsl/vascular/1002/flair_reg.nii' --pallidum-separate > --lesion --lesion-mask-pattern 0 1 --output > '/home/neuroimage/fsl/vascular/1002/' > > > > The output files were: > > - cost.txt > - priors-testing.mgz > - samseg.talairach.lta > - template.lta > - template_coregistered.mgz > - template_transforms.mat > > However I don't find any file with the white matter lesions segmented or a > stat file. I would send you the terminal outputs but is too extensive. > Would you help me? > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1TehWGCxNiuRHOQYLTB-oA6DCx2RK244h7Q5HWmIGXOtq0iXjg6q9WpW_f9H3HcjQLpE3ZqBIz5W1OM3ZWjOMzYYFu8EbU8gxvZ46LC8fbZKMdqN1pU1jwjdU1ZcyoYIf4ntG6n-qx5bXb10fnhTYj2zpRa3ORuXZJMGCbp_VycdsrbMQhZFfQgO12omg0NNN8IU0Dug-Ss1IQhlPQvlbIwlQI14f3gaBTiZRw4bwSC-uDQCqwMBYWOjlqc_BsEfj/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > http://secure-web.cisco.com/1QxYjqlRJPbxGmQ7muQI08i0E_Ta77Hs5RqkRdD6XGFGDUGXP83KZxoS_rb2lxEBnd2vYPGYQex2OG12SG5f411W7niZO3DLbxIzQMyPAiu2FNPbG2BFi9TReiANj4XGhgR6g5dp9xYMW01DmE9SOhIHNOXK4bvTPdlu51gZPyHAvNo9kYCbZIwyxF6ZdCe_pUObxKVUt_TSG7Yp2v9O0uPmLge3SO1ku7uiK8soWXkxKXdYs4b40nYDLzkBVQbZs/http%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > . If the e-mail was sent > to you in error but does not contain patient information, please contact > the sender and properly dispose of the e-mail. > Please note that this e-mail is not secure (encrypted). If you do not > wish to continue communication over unencrypted e-mail, please notify the > sender of this message immediately. Continuing to send or respond to > e-mail after receiving this message means you understand and accept this > risk and wish to continue to communicate over unencrypted e-mail. >
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