Can you take a look at the volume that was the input to mri_normalize and see
if it looks ok? And check the talairach
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Corinna Bauer
Sent: Wednesday, May 5, 2021 5:25 PM
To: Mailing Freesurfer List <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] error at 3d normalization pass 1 of 2 stage with MP2RAGE
data
External Email - Use Caution
Hello all,
I am trying to run recon-all on MP2RAGE data from Philips and it exits with
errors at this point:
3d normalization pass 1 of 2
error: No such file or directory
error: MRInormFindControlPoints: could not find enough control points
error: No such file or directory
error: MRInormFindControlPoints failed
Command exited with non-zero status 253
The log file is attached. The input file was the MPRAGE generated on the
scanner console (i.e. not the T1 map). I attached a screenshot of orig.mgz
viewed in fsleyes. Any thoughts?
Thanks!
Corinna
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