External Email - Use Caution It might be necessary to resample the atlas to the native mesh surfaces and convert it to the .annot file format from GIFTI. The former can be done using these instructions to get to fsaverage and then presumably FreeSurfer has a tool to get it to the native mesh and the latter with mris_convert:
https://secure-web.cisco.com/14YUuLKxR8nqmyOxrwK7DZrs4RQGGbNtr7w49dQj1Ij4Zka4d4kqMQf275lQEk6s5VCtrGZPFMLxTlGUIqPf4V-tscwWLIQzYWUvmfU3jwE7Xv0thgSwKkkmAfDxfjkDsw6P0Hr1NZNA98__f-Fq5ofMbHzIllAPPFaqe2oNp8paK-232vTFTzsCdsZhFbHVvg4X_hHh_jzQEPzoJNzF9NmKPDTCcuER-vIOeOieDje8g6UVl4R8Rl-5lSe63qeZ9ZZKTII7lwJP9kq4e_3tYeg/https%3A%2F%2Fwiki.humanconnectome.org%2Fdownload%2Fattachments%2F63078513%2FResampling-FreeSurfer-HCP.pdf Matt. From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Miguel Ángel Rivas Fernández <miguelrivasf...@gmail.com> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Date: Wednesday, March 31, 2021 at 8:58 AM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Export stats: HCP Multi Modal parcellation External Email - Use Caution Hello Glasser, In addition to freesurfer's asegstats2table, I would be interested in volume, cortical thickness and area of the HCP atlas (please, see attached .csv file). Other software (e.g CAT12<http://secure-web.cisco.com/1COAdbRtDckHN6yiHBswwxyVsNqxiQs4J0BIS3hCQNJzehplVAuaKl0ugaaaCSeAfNzGdiJpsvU6rvCBU9qIhWpNEmuB5E_ojQBwSRyr9qaSyv5oU0ed91aiW7flrQXvoPLoIyDuKczkUZI6P9NtmVQQqy01bFfwg_qZ8BES-sVkfG4hnppkEYdZb_dXubwS-Xt-QLigkXU9P3ZcpEIZB1hUvLLXtw-RM99oapY7Dm8XYjdgD9PM7R654BuszY4iuqGBnbLgZEA4VGHPlQJsk9A/http%3A%2F%2Fwww.neuro.uni-jena.de%2Fcat12-html%2Fcat_methods_RBM.html%23FS_HCP>) allows exporting these measurements in HCP parcellation but I would like to know if it is possible with MRI data processed un FS.v6 Thank you in advance. Best regards, # El mié., 31 mar. 2021 15:28, Glasser, Matthew <glass...@wustl.edu<mailto:glass...@wustl.edu>> escribió: External Email - Use Caution What stats are you looking for? Matt. From: <freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> on behalf of Miguel Ángel Rivas Fernández <miguelrivasf...@gmail.com<mailto:miguelrivasf...@gmail.com>> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>> Date: Wednesday, March 31, 2021 at 4:36 AM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>> Subject: [Freesurfer] Export stats: HCP Multi Modal parcellation External Email - Use Caution Dear Freesurfer experts, it is possible to export the stats of subjects reconstructed with freesurfer v.6 using the HCP Multi Modal parcellation? (Glasser et al., 2016). Thank you in advance. Best regards, -- Miguel Ángel Rivas Fernández ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1D3RUPNr22Aomw-x2Nwhwkir2Jl3SGeTIK6hkmCI518aAyqv07Q5K_OaRNSjuEe2XR09KgCzEdqsdGx671Y8hLJDu0G-QhSiX0Rhbop6EZVw6JkOzWJAy2JwLCZO5fe21oNs-LLZ7VYFRF9y3wvbzdSBixNjKu2dBbIcrJmWu_kC_pNKpFAHpWHaqrzVdxSGUl4u5iU8_MNWi01pPRnE19ZVOTbcbf-QdrKL4qLTsd80vHiVKPoaR4G4tdLR8ANgb4NWs1p1EKrpFHRMZ-3SDMg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer<https://secure-web.cisco.com/1zrZ5NgwlmYyTyG0sGwBn4QgIqRsDKmXsWOeLE3T6NKGEKHoICs0g131f8SZqVQ9ipaWG2fl0iCv8_kq0zGE1aLTDbKq872D46BHHxMF91NDp6UksZOMoNeV1aAkCwsrjyKTDlnlqE2GeYcUDQDJFMf0qBKOkBGanibW1T4xs3c8yBL1Sj2W7ZCKUI5PQd-vUsf1mIQll5eyexTepf0DAnjkzMfhVdtRDNpW38Z8cpCNpspWzfNDFy6EA-GSXnwl3oBg_9YlXcN3Mw9iUJpZmKA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
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