One way you can do it is to specify all the GM ROIs with --rescale Id1 Id2 ...
Otherwise, you can run fscalc, eg,
fscalc mgx.ctxgm.nii.gz div `cat global.gm.dat ` -mul 100 -o
mgx.ctxgm.rescaled.nii.gz
On 11/20/2020 11:44 AM, Boris Rauchmann wrote:
External Email - Use Caution
Dear all,
How can I easily scale the mgx.ctxgm.nii.gz files with the whole brain mean
intensity using PETSufer? Is there a command to use in mri_gtmpvc like
--rescale X?
I know that I can find the mean in global.gm.dat and I can use that value for
scaling the atlas based results in gtm.stats.dat but how can I easily scale the
image?
Thanks,
Boris
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