It looks like the orig extends too far, so try editing the wm.mgz
On 9/25/2020 11:51 AM, Jake Jensen wrote:
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Attached are a few snapshots of the ?.orig surfaces (pink), pial
(red), and wm (yellow)
On Fri, Sep 25, 2020 at 7:46 AM Douglas N. Greve
<dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu>> wrote:
Can you show it with the ?h.orig surfaces? Those should closely
follow the boundary of the wm.mgz volume
On 9/23/2020 2:11 PM, Jake Jensen wrote:
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Hello,
I am attempting to edit a subject, but upon removing voxels where
the WM and pial surfaces should not be, the WM surface does not
receed (pictures are attached).
I have attempted this with -all and -autorecon2, running it again
from the original 001.mgz file, as well as attempting to run it
from the beginning with -clean. The end result is consistently
the same, as seen in the attached images. Additionally, it is
strange that the WM surface crosses the pial.
I could not seem to find a solution to this in the archives.
FreeSurfer version:
freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
Platform: OSX mojave
-all -autorecon2
Recon all log attached
Thank you!
-Jacob
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