External Email - Use Caution
Hello,
Thank you for such a prompt response.
This has happened consistently and across multiple mac laptops that we utilize
in our laboratory.
Below is the freesurfer version that we are utilizing as noted in the
build-stamp.txt file:
freesurfer-darwin-macOS-7.1.1-20200811-8b40551
That would be great thank you so much.
Sincerely,
James Park
From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of "Douglas N. Greve"
<dgr...@mgh.harvard.edu>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Tuesday, September 8, 2020 at 12:06 PM
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: [External] Re: [Freesurfer] Troubleshooting -parallel flag for
Freesurfer, error in the cortical ribbon mask stage during recon-all
The issue with the ribbon is something we recently became aware of. does it
happen consistently for you? I can send you a recon-all that will fix this for
you, just tell me which version you are running.
On 9/8/2020 11:49 AM, Park, James wrote:
External Email - Use Caution
Sincerely,
James Park
From: "Park, James"
<james.kunwoo.p...@emory.edu><mailto:james.kunwoo.p...@emory.edu>
Date: Tuesday, September 8, 2020 at 11:48 AM
To: "freesurfer@nmr.mgh.harvard.edu"<mailto:freesurfer@nmr.mgh.harvard.edu>
<freesurfer@nmr.mgh.harvard.edu><mailto:freesurfer@nmr.mgh.harvard.edu>
Subject: Troubleshooting -parallel flag for Freesurfer, error in the cortical
ribbon mask stage during recon-all
Dear FreeSurfer Developers,
We have recently been exploring the recon -all option to analyze T1 MRI data
and ran into an error specifically when utilizing the -parallel flag.
We specifically ran into errors at the cortical ribbon mask stage during the
code we ran (shown below with some parts of the paths removed).
recon-all -i “…preOp_T1MRI_axial-anon.nii" -s "freesurfer_output" -sd
“…/freesurfer_output" -all -parallel
When the same code was run without the -parallel flag, the recon-all line ran
successfully.
This was run on a Mac with macOS Catalina Version 10.15.6 using FreeSurfer
version freesurfer-darwin-macOS-7.1.1-20200811-8b40551.
The recon-all.log file has been attached here as a reference.
Thank you for your help in advance.
Sincerely,
James Park
Willie Lab, Dpt. of Neurosurgery, Emory
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