The issue with the ribbon is something we recently became aware of. does
it happen consistently for you? I can send you a recon-all that will fix
this for you, just tell me which version you are running.
On 9/8/2020 11:49 AM, Park, James wrote:
External Email - Use Caution
Sincerely,
James Park
*From: *"Park, James" <james.kunwoo.p...@emory.edu>
*Date: *Tuesday, September 8, 2020 at 11:48 AM
*To: *"freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
*Subject: *Troubleshooting -parallel flag for Freesurfer, error in the
cortical ribbon mask stage during recon-all
Dear FreeSurfer Developers,
We have recently been exploring the recon -all option to analyze T1
MRI data and ran into an error specifically when utilizing the
-parallel flag.
We specifically ran into errors at the cortical ribbon mask stage
during the code we ran (shown below with some parts of the paths removed).
recon-all -i “…preOp_T1MRI_axial-anon.nii" -s "freesurfer_output" -sd
“…/freesurfer_output" -all -parallel
When the same code was run without the -parallel flag, the recon-all
line ran successfully.
This was run on a Mac with macOS Catalina Version 10.15.6 using
FreeSurfer version freesurfer-darwin-macOS-7.1.1-20200811-8b40551.
The recon-all.log file has been attached here as a reference.
Thank you for your help in advance.
Sincerely,
James Park
Willie Lab, Dpt. of Neurosurgery, Emory
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