OK, try again:)
On 7/17/2020 1:42 PM, Nasr, Shahin,Ph.D. wrote:
the tksurfer look correct as below
tksurfer SUBJ lh inflated -aparc -tcl
/usr/local/freesurfer/dev/lib/tcl/eccen-flat.tcl -tcl rtv.tcl
But, eccen-flat.tcl is not executed and I have a blank inflated map.
When I drop --tcl rtv.tcl, everything works.
------------------------------------------------------------------------
*From:* freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve
<dgr...@mgh.harvard.edu>
*Sent:* Friday, July 17, 2020 1:38 PM
*To:* freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
*Subject:* Re: [Freesurfer] rtview - loading a tcl file
sorry, they again
On 7/17/2020 1:27 PM, Nasr, Shahin,Ph.D. wrote:
tksurfer SUBJ lh inflated -aparc -tcl
/usr/local/freesurfer/dev/lib/tcl/eccen-flat.tcl
as you can see rtv.tcl is dropped.
------------------------------------------------------------------------
*From:* freesurfer-boun...@nmr.mgh.harvard.edu
<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu>
<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas
N. Greve <dgr...@mgh.harvard.edu> <mailto:dgr...@mgh.harvard.edu>
*Sent:* Friday, July 17, 2020 1:22 PM
*To:* freesurfer@nmr.mgh.harvard.edu
<mailto:freesurfer@nmr.mgh.harvard.edu>
<freesurfer@nmr.mgh.harvard.edu> <mailto:freesurfer@nmr.mgh.harvard.edu>
*Subject:* Re: [Freesurfer] rtview - loading a tcl file
What is the tksurfer command that is output?
On 7/17/2020 1:13 PM, Nasr, Shahin,Ph.D. wrote:
Unfortunately it is not working. My command is like this:
rtview --s SUBJ --real real.nii --imag imag.nii --eccen --hemi lh
--fsig fsig.nii --flat --ss 0 --tcl rtv.tcl
rtv.tcl (attached to this email) has just 2 lines as below:
labl_remove_all
set colscale 8
Thanks
------------------------------------------------------------------------
*From:* freesurfer-boun...@nmr.mgh.harvard.edu
<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu>
<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas
N. Greve <dgr...@mgh.harvard.edu> <mailto:dgr...@mgh.harvard.edu>
*Sent:* Friday, July 17, 2020 1:04 PM
*To:* freesurfer@nmr.mgh.harvard.edu
<mailto:freesurfer@nmr.mgh.harvard.edu>
<freesurfer@nmr.mgh.harvard.edu> <mailto:freesurfer@nmr.mgh.harvard.edu>
*Subject:* Re: [Freesurfer] rtview - loading a tcl file
ok, try now
On 7/17/2020 12:49 PM, Nasr, Shahin,Ph.D. wrote:
Thanks. But as far as I see,when I use --tcl <file>, it avoids
execution of other tcl files such as eccen-flat.tcl. What I had in
my mind was "adding" a tcl.
Sorry for all the troubles
------------------------------------------------------------------------
*From:* freesurfer-boun...@nmr.mgh.harvard.edu
<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu>
<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of
Douglas N. Greve <dgr...@mgh.harvard.edu>
<mailto:dgr...@mgh.harvard.edu>
*Sent:* Friday, July 17, 2020 12:32 PM
*To:* freesurfer@nmr.mgh.harvard.edu
<mailto:freesurfer@nmr.mgh.harvard.edu>
<freesurfer@nmr.mgh.harvard.edu>
<mailto:freesurfer@nmr.mgh.harvard.edu>
*Subject:* Re: [Freesurfer] rtview - loading a tcl file
I just added --tcl to rtview. The new version is in dev
On 7/17/2020 12:23 PM, Nasr, Shahin,Ph.D. wrote:
Hi Surfers,
I was wondering if there is a way to load a tcl file with
rtview command. Specifically, I need to change the color table to
RYGB, remove the aparc, ... .
Thanks
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