the tksurfer look correct as below tksurfer SUBJ lh inflated -aparc -tcl /usr/local/freesurfer/dev/lib/tcl/eccen-flat.tcl -tcl rtv.tcl
But, eccen-flat.tcl is not executed and I have a blank inflated map. When I drop --tcl rtv.tcl, everything works. ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve <dgr...@mgh.harvard.edu> Sent: Friday, July 17, 2020 1:38 PM To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] rtview - loading a tcl file sorry, they again On 7/17/2020 1:27 PM, Nasr, Shahin,Ph.D. wrote: tksurfer SUBJ lh inflated -aparc -tcl /usr/local/freesurfer/dev/lib/tcl/eccen-flat.tcl as you can see rtv.tcl is dropped. ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> <freesurfer-boun...@nmr.mgh.harvard.edu><mailto:freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve <dgr...@mgh.harvard.edu><mailto:dgr...@mgh.harvard.edu> Sent: Friday, July 17, 2020 1:22 PM To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu> <freesurfer@nmr.mgh.harvard.edu><mailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] rtview - loading a tcl file What is the tksurfer command that is output? On 7/17/2020 1:13 PM, Nasr, Shahin,Ph.D. wrote: Unfortunately it is not working. My command is like this: rtview --s SUBJ --real real.nii --imag imag.nii --eccen --hemi lh --fsig fsig.nii --flat --ss 0 --tcl rtv.tcl rtv.tcl (attached to this email) has just 2 lines as below: labl_remove_all set colscale 8 Thanks ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> <freesurfer-boun...@nmr.mgh.harvard.edu><mailto:freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve <dgr...@mgh.harvard.edu><mailto:dgr...@mgh.harvard.edu> Sent: Friday, July 17, 2020 1:04 PM To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu> <freesurfer@nmr.mgh.harvard.edu><mailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] rtview - loading a tcl file ok, try now On 7/17/2020 12:49 PM, Nasr, Shahin,Ph.D. wrote: Thanks. But as far as I see,when I use --tcl <file>, it avoids execution of other tcl files such as eccen-flat.tcl. What I had in my mind was "adding" a tcl. Sorry for all the troubles ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> <freesurfer-boun...@nmr.mgh.harvard.edu><mailto:freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve <dgr...@mgh.harvard.edu><mailto:dgr...@mgh.harvard.edu> Sent: Friday, July 17, 2020 12:32 PM To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu> <freesurfer@nmr.mgh.harvard.edu><mailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] rtview - loading a tcl file I just added --tcl to rtview. The new version is in dev On 7/17/2020 12:23 PM, Nasr, Shahin,Ph.D. wrote: Hi Surfers, I was wondering if there is a way to load a tcl file with rtview command. Specifically, I need to change the color table to RYGB, remove the aparc, ... . Thanks _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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