I think they should give the same result, but try one or two to confirm
On 6/29/2020 6:12 PM, Yann Quidé wrote:
External Email - Use Caution
Hi Andrew,
Thanks for this.
Just a quick follow up question: does that mean I will have to recon
all all the other scans that did not show this error with v7.1.1 for
consistency, or will it be fine to keep them processed with v7.1.0?
Thanks,
Yann
On 30 Jun 2020, at 2:04 am, Hoopes, Andrew <ahoo...@mgh.harvard.edu
<mailto:ahoo...@mgh.harvard.edu>> wrote:
Hi Yann (and anyone else with mri_cc failures on mac),
We have a fix that we'll include in an upcoming 7.1.1 patch release.
If you'd like a quick local fix, you can update your distribution
with the new version of mri_cc by running the following commands
(this might require sudo):
cd $FREESURFER_HOME/bin
rm mri_cc
curlhttps://surfer.nmr.mgh.harvard.edu/pub/dist/tmp_patch/mri_cc-O mri_cc
chmod +x mri_cc
Please let us know if this does not solve your issue.
Andrew
*From:*<freesurfer-boun...@nmr.mgh.harvard.edu
<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> on behalf of Yann
Quidé <yannqu...@gmail.com <mailto:yannqu...@gmail.com>>
*Reply-To:*FS Help <freesurfer@nmr.mgh.harvard.edu
<mailto:freesurfer@nmr.mgh.harvard.edu>>
*Date:*Monday, June 29, 2020 at 2:35 AM
*To:*FS Help <freesurfer@nmr.mgh.harvard.edu
<mailto:freesurfer@nmr.mgh.harvard.edu>>
*Subject:*Re: [Freesurfer] Error recon-all mri_cc
* External Email - Use Caution *
Hi team,
I appreciate everyone is busy, but did anyone have time to look at my
subject?
It was uploaded on June 18. It’s called yannquide.tar.gz
Thanks for your time.
Yann
On 22 Jun 2020, at 12:51 pm, Yann Quidé <yannqu...@gmail.com
<mailto:yannqu...@gmail.com>> wrote:
Hi team,
I was just wondering if you received my file and if you had time to
look at it?
Thanks,
Yann
On 18 Jun 2020, at 7:08 am, Yann Quidé <yannqu...@gmail.com
<mailto:yannqu...@gmail.com>> wrote:
Hi Doug,
Thanks for this. I sent the file; it’s called yannquide.tar.gz.
Yann
On 16 Jun 2020, at 11:56 pm, Douglas N. Greve
<dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu>> wrote:
Can you upload the subject so I can take a look? Instructions below
From the linux command line,
Create the file you want to upload, eg,
cd $SUBJECTS_DIR
tar cvfz subject.tar.gz ./subject
Now log into our anonymous FTP site:
ftpsurfer.nmr.mgh.harvard.edu <http://surfer.nmr.mgh.harvard.edu/>
It will ask you for a user name: use "anonymous" (no quotes)
It will ask you for a password: use "anonymous" (no quotes)
cd transfer/incoming
binary
put subject.tar.gz
Send an email that the file has been and the name of the file.
On 6/15/2020 8:28 PM, Yann Quidé wrote:
External Email - Use Caution
Hi there,
I am using Freesurfer v7.1.0 and encounter an error for few of my
subjects only.
Recon-all finishes with errors, and it seems this occurs during
the segmentation.
What can I do to fix this?
I attached the recon-all log for one of my subject.
Thanks,
Yann
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